Atlas of Genetics and Cytogenetics in Oncology and Haematology

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VPREB3 (pre-B lymphocyte 3)

Identity

Other names8HS20
N27C7-2
HGNC (Hugo) VPREB3
LocusID (NCBI) 29802
Location 22q11.23
Location_base_pair Starts at 24094930 and ends at 24096630 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VPREB3   12710
Entrez_Gene (NCBI)VPREB3  29802  pre-B lymphocyte 3
Cards
GeneCards (Weizmann)VPREB3
Ensembl (Hinxton)ENSG00000128218 [Gene_View]  chr22:24094930-24096630 [Contig_View]  VPREB3 [Vega]
AceView (NCBI)VPREB3
Genatlas (Paris)VPREB3
SOURCE (Stanford)NM_013378
Genomic and cartography
GoldenPath (UCSC)VPREB3  -  22q11.23   chr22:24094930-24096630 -  22q11.23   [Description]    (hg19-Feb_2009)
EnsemblVPREB3 - 22q11.23 [CytoView]
Mapping of homologs : NCBIVPREB3 [Mapview]
OMIM605017   
Gene and transcription
Genbank (Entrez)AF163825 AK312098 AY359000 BC020666 BQ899182
RefSeq transcript (SRS)NM_013378
RefSeq transcript (Entrez)NM_013378
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011520 NW_001838745 NW_004078112
Consensus coding sequences : CCDS (NCBI)VPREB3
Cluster EST : UnigeneHs.136713 [ SRS ] Hs.136713 [ NCBI ]
CGAP (NCI)Hs.136713
Alternative Splicing : Fast-db (Paris)GSHG0020245
Alternative Splicing GalleryENSG00000128218
Gene ExpressionVPREB3 [ NCBI-GEO ]   VPREB3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKI3 (SRS) Q9UKI3 (Uniprot)
NextProtQ9UKI3
With graphics : InterProQ9UKI3
Splice isoforms : SwissVarQ9UKI3(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_V-set    Ig_V-set_subgr   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_V-set    Ig_V-set_subgr   
Related proteins : CluSTrQ9UKI3
Domain families : Pfam (SRS)V-set (PF07686)   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
DMDM29802
Blocks (Seattle)Q9UKI3
Human Protein AtlasENSG00000128218
HPRD05426
IPIIPI00007573   IPI00879467   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKI3
IntAct (EBI)Q9UKI3
FunCoupENSG00000128218
REACTOMEVPREB3
Protein Interaction Database29802
BioGRIDVPREB3
InParanoidQ9UKI3
Interologous Interaction database Q9UKI3
IntegromeDBVPREB3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)VPREB3
SNP (GeneSNP Utah)VPREB3
SNP : HGBaseVPREB3
Genetic variants : HAPMAPVPREB3
Somatic Mutations in Cancer : COSMICVPREB3 
CONAN: Copy Number AnalysisVPREB3 
Mutations and Diseases : HGMDVPREB3
OMIM605017   
GENETests605017   
Disease Genetic AssociationVPREB3
Huge Navigator VPREB3 [HugePedia]  VPREB3 [HugeCancerGEM]
Genomic VariantsVPREB3  VPREB3 [DGVbeta]
snp3D : Map Gene to Disease29802
General knowledge
Homologs : HomoloGeneVPREB3
Homology/Alignments : Family Browser (UCSC)VPREB3
Phylogenetic Trees/Animal Genes : TreeFamVPREB3
Chemical/Protein Interactions : CTD29802
Chemical/Pharm GKB GenePA37325
Clinical trialVPREB3
Cancer Resource (Charite)ENSG00000128218
Ontology : AmiGOendoplasmic reticulum  
Ontology : EGO-EBIendoplasmic reticulum  
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
PubGeneVPREB3
iHOPVPREB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:13 CEST 2013
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