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VPREB3 (V-set pre-B cell surrogate light chain 3)

Identity

Alias_symbol (synonym)8HS20
Other aliasN27C7-2
HGNC (Hugo) VPREB3
LocusID (NCBI) 29802
Atlas_Id 42795
Location 22q11.23  [Link to chromosome band 22q11]
Location_base_pair Starts at 23752743 and ends at 23754443 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VPREB3 (22q11.23) / CSF1R (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPREB3   12710
Cards
Entrez_Gene (NCBI)VPREB3  29802  V-set pre-B cell surrogate light chain 3
Aliases8HS20; N27C7-2
GeneCards (Weizmann)VPREB3
Ensembl hg19 (Hinxton)ENSG00000128218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128218 [Gene_View]  chr22:23752743-23754443 [Contig_View]  VPREB3 [Vega]
ICGC DataPortalENSG00000128218
TCGA cBioPortalVPREB3
AceView (NCBI)VPREB3
Genatlas (Paris)VPREB3
WikiGenes29802
SOURCE (Princeton)VPREB3
Genetics Home Reference (NIH)VPREB3
Genomic and cartography
GoldenPath hg38 (UCSC)VPREB3  -     chr22:23752743-23754443 -  22q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPREB3  -     22q11.23   [Description]    (hg19-Feb_2009)
EnsemblVPREB3 - 22q11.23 [CytoView hg19]  VPREB3 - 22q11.23 [CytoView hg38]
Mapping of homologs : NCBIVPREB3 [Mapview hg19]  VPREB3 [Mapview hg38]
OMIM605017   
Gene and transcription
Genbank (Entrez)AF163825 AK312098 AY359000 BC020666 BQ899182
RefSeq transcript (Entrez)NM_013378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPREB3
Cluster EST : UnigeneHs.136713 [ NCBI ]
CGAP (NCI)Hs.136713
Alternative Splicing GalleryENSG00000128218
Gene ExpressionVPREB3 [ NCBI-GEO ]   VPREB3 [ EBI - ARRAY_EXPRESS ]   VPREB3 [ SEEK ]   VPREB3 [ MEM ]
Gene Expression Viewer (FireBrowse)VPREB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29802
GTEX Portal (Tissue expression)VPREB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKI3
Splice isoforms : SwissVarQ9UKI3
PhosPhoSitePlusQ9UKI3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)VPREB3
DMDM Disease mutations29802
Blocks (Seattle)VPREB3
SuperfamilyQ9UKI3
Human Protein AtlasENSG00000128218
Peptide AtlasQ9UKI3
HPRD05426
IPIIPI00007573   IPI00879467   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKI3
IntAct (EBI)Q9UKI3
FunCoupENSG00000128218
BioGRIDVPREB3
STRING (EMBL)VPREB3
ZODIACVPREB3
Ontologies - Pathways
QuickGOQ9UKI3
Ontology : AmiGOimmunoglobulin production  extracellular region  extracellular space  endoplasmic reticulum  immune response  leukocyte migration  
Ontology : EGO-EBIimmunoglobulin production  extracellular region  extracellular space  endoplasmic reticulum  immune response  leukocyte migration  
NDEx NetworkVPREB3
Atlas of Cancer Signalling NetworkVPREB3
Wikipedia pathwaysVPREB3
Orthology - Evolution
OrthoDB29802
GeneTree (enSembl)ENSG00000128218
Phylogenetic Trees/Animal Genes : TreeFamVPREB3
HOVERGENQ9UKI3
HOGENOMQ9UKI3
Homologs : HomoloGeneVPREB3
Homology/Alignments : Family Browser (UCSC)VPREB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPREB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPREB3
dbVarVPREB3
ClinVarVPREB3
1000_GenomesVPREB3 
Exome Variant ServerVPREB3
ExAC (Exome Aggregation Consortium)VPREB3 (select the gene name)
Genetic variants : HAPMAP29802
Genomic Variants (DGV)VPREB3 [DGVbeta]
DECIPHERVPREB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPREB3 
Mutations
ICGC Data PortalVPREB3 
TCGA Data PortalVPREB3 
Broad Tumor PortalVPREB3
OASIS PortalVPREB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPREB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPREB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPREB3
DgiDB (Drug Gene Interaction Database)VPREB3
DoCM (Curated mutations)VPREB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPREB3 (select a term)
intoGenVPREB3
Cancer3DVPREB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605017   
Orphanet
MedgenVPREB3
Genetic Testing Registry VPREB3
NextProtQ9UKI3 [Medical]
TSGene29802
GENETestsVPREB3
Huge Navigator VPREB3 [HugePedia]
snp3D : Map Gene to Disease29802
BioCentury BCIQVPREB3
ClinGenVPREB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29802
Chemical/Pharm GKB GenePA37325
Clinical trialVPREB3
Miscellaneous
canSAR (ICR)VPREB3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPREB3
EVEXVPREB3
GoPubMedVPREB3
iHOPVPREB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:43:52 CEST 2017

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