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VPS11 (VPS11 core subunit of CORVET and HOPS complexes)

Identity

Alias_namesvacuolar protein sorting 11 (yeast homolog)
vacuolar protein sorting 11 homolog (S. cerevisiae)
VPS11, CORVET/HOPS core subunit
Alias_symbol (synonym)RNF108
PEP5
Other aliasEND1
HLD12
hVPS11
HGNC (Hugo) VPS11
LocusID (NCBI) 55823
Atlas_Id 56052
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119067752 and ends at 119081978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS11   14583
Cards
Entrez_Gene (NCBI)VPS11  55823  VPS11 core subunit of CORVET and HOPS complexes
AliasesEND1; HLD12; PEP5; RNF108; 
hVPS11
GeneCards (Weizmann)VPS11
Ensembl hg19 (Hinxton)ENSG00000160695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160695 [Gene_View]  ENSG00000160695 [Sequence]  chr11:119067752-119081978 [Contig_View]  VPS11 [Vega]
ICGC DataPortalENSG00000160695
TCGA cBioPortalVPS11
AceView (NCBI)VPS11
Genatlas (Paris)VPS11
WikiGenes55823
SOURCE (Princeton)VPS11
Genetics Home Reference (NIH)VPS11
Genomic and cartography
GoldenPath hg38 (UCSC)VPS11  -     chr11:119067752-119081978 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS11  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathVPS11 - 11q23.3 [CytoView hg19]  VPS11 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000160695
Mapping of homologs : NCBIVPS11 [Mapview hg19]  VPS11 [Mapview hg38]
OMIM608549   616683   
Gene and transcription
Genbank (Entrez)AB027508 AF258558 AF308800 AK023279 AK026012
RefSeq transcript (Entrez)NM_001290185 NM_021729
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS11
Alternative Splicing GalleryENSG00000160695
Gene ExpressionVPS11 [ NCBI-GEO ]   VPS11 [ EBI - ARRAY_EXPRESS ]   VPS11 [ SEEK ]   VPS11 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55823
GTEX Portal (Tissue expression)VPS11
Human Protein AtlasENSG00000160695-VPS11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS11
DMDM Disease mutations55823
Blocks (Seattle)VPS11
Human Protein Atlas [tissue]ENSG00000160695-VPS11 [tissue]
HPRD12258
IPIIPI00300697   IPI00902899   IPI00922401   
Protein Interaction databases
FunCoupENSG00000160695
BioGRIDVPS11
STRING (EMBL)VPS11
ZODIACVPS11
Ontologies - Pathways
Huge Navigator VPS11 [HugePedia]
snp3D : Map Gene to Disease55823
BioCentury BCIQVPS11
ClinGenVPS11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55823
Chemical/Pharm GKB GenePA37902
Clinical trialVPS11
Miscellaneous
canSAR (ICR)VPS11 (select the gene name)
DataMed IndexVPS11
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS11
EVEXVPS11
GoPubMedVPS11
iHOPVPS11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:17 CET 2020

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