Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VPS13A-AS1 (VPS13A antisense RNA 1)

Identity

Alias_namesVPS13A antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) VPS13A-AS1
LocusID (NCBI) 100286938
Atlas_Id 75624
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 79791672 and ends at 79792833 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS13A-AS1   44167
Cards
Entrez_Gene (NCBI)VPS13A-AS1  100286938  VPS13A antisense RNA 1
Aliases
GeneCards (Weizmann)VPS13A-AS1
Ensembl hg19 (Hinxton)ENSG00000232998 [Gene_View]  chr9:79791672-79792833 [Contig_View]  VPS13A-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232998 [Gene_View]  chr9:79791672-79792833 [Contig_View]  VPS13A-AS1 [Vega]
ICGC DataPortalENSG00000232998
TCGA cBioPortalVPS13A-AS1
AceView (NCBI)VPS13A-AS1
Genatlas (Paris)VPS13A-AS1
WikiGenes100286938
SOURCE (Princeton)VPS13A-AS1
Genetics Home Reference (NIH)VPS13A-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)VPS13A-AS1  -     chr9:79791672-79792833 -  9q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS13A-AS1  -     9q21.2   [Description]    (hg38-Dec_2013)
EnsemblVPS13A-AS1 - 9q21.2 [CytoView hg19]  VPS13A-AS1 - 9q21.2 [CytoView hg38]
Mapping of homologs : NCBIVPS13A-AS1 [Mapview hg19]  VPS13A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA626167 DB509755 HG502145
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)VPS13A-AS1
Cluster EST : UnigeneHs.662256 [ NCBI ]
CGAP (NCI)Hs.662256
Alternative Splicing GalleryENSG00000232998
Gene ExpressionVPS13A-AS1 [ NCBI-GEO ]   VPS13A-AS1 [ EBI - ARRAY_EXPRESS ]   VPS13A-AS1 [ SEEK ]   VPS13A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS13A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100286938
GTEX Portal (Tissue expression)VPS13A-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS13A-AS1
DMDM Disease mutations100286938
Blocks (Seattle)VPS13A-AS1
Human Protein AtlasENSG00000232998
Protein Interaction databases
FunCoupENSG00000232998
BioGRIDVPS13A-AS1
STRING (EMBL)VPS13A-AS1
ZODIACVPS13A-AS1
Ontologies - Pathways
Huge Navigator VPS13A-AS1 [HugePedia]
snp3D : Map Gene to Disease100286938
BioCentury BCIQVPS13A-AS1
ClinGenVPS13A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100286938
Clinical trialVPS13A-AS1
Miscellaneous
canSAR (ICR)VPS13A-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS13A-AS1
EVEXVPS13A-AS1
GoPubMedVPS13A-AS1
iHOPVPS13A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:17 CET 2017

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