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VPS13A (vacuolar protein sorting 13 homolog A (S. cerevisiae))

Identity

Other namesCHAC
CHOREIN
HGNC (Hugo) VPS13A
LocusID (NCBI) 23230
Atlas_Id 52602
Location 9q21.2
Location_base_pair Starts at 79792361 and ends at 80032399 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
GPR107 9q34.11 / VPS13A 9q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS13A   1908
Cards
Entrez_Gene (NCBI)VPS13A  23230  vacuolar protein sorting 13 homolog A (S. cerevisiae)
GeneCards (Weizmann)VPS13A
Ensembl hg19 (Hinxton)ENSG00000197969 [Gene_View]  chr9:79792361-80032399 [Contig_View]  VPS13A [Vega]
Ensembl hg38 (Hinxton)ENSG00000197969 [Gene_View]  chr9:79792361-80032399 [Contig_View]  VPS13A [Vega]
ICGC DataPortalENSG00000197969
TCGA cBioPortalVPS13A
AceView (NCBI)VPS13A
Genatlas (Paris)VPS13A
WikiGenes23230
SOURCE (Princeton)VPS13A
Genomic and cartography
GoldenPath hg19 (UCSC)VPS13A  -     chr9:79792361-80032399 +  9q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS13A  -     9q21.2   [Description]    (hg38-Dec_2013)
EnsemblVPS13A - 9q21.2 [CytoView hg19]  VPS13A - 9q21.2 [CytoView hg38]
Mapping of homologs : NCBIVPS13A [Mapview hg19]  VPS13A [Mapview hg38]
OMIM200150   605978   
Gene and transcription
Genbank (Entrez)AB023203 AB054005 AF337532 AJ608769 AJ626859
RefSeq transcript (Entrez)NM_001018037 NM_001018038 NM_015186 NM_033305
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_008931 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)VPS13A
Cluster EST : UnigeneHs.662256 [ NCBI ]
CGAP (NCI)Hs.662256
Alternative Splicing : Fast-db (Paris)GSHG0030204
Alternative Splicing GalleryENSG00000197969
Gene ExpressionVPS13A [ NCBI-GEO ]     VPS13A [ SEEK ]   VPS13A [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)23230
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RL7 (Uniprot)
NextProtQ96RL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RL7
Splice isoforms : SwissVarQ96RL7 (Swissvar)
PhosPhoSitePlusQ96RL7
Domains : Interpro (EBI)Autophagy-rel_C    VPS13    VPS13A_N    VPSAP_dom   
Domain families : Pfam (Sanger)ATG_C (PF09333)    Chorein_N (PF12624)    DUF1162 (PF06650)   
Domain families : Pfam (NCBI)pfam09333    pfam12624    pfam06650   
DMDM Disease mutations23230
Blocks (Seattle)VPS13A
Human Protein AtlasENSG00000197969
Peptide AtlasQ96RL7
HPRD05814
IPIIPI00873376   IPI00478586   IPI00746613   IPI00604660   IPI01015146   IPI01010006   IPI01012336   IPI01009641   IPI01013797   
Protein Interaction databases
DIP (DOE-UCLA)Q96RL7
IntAct (EBI)Q96RL7
FunCoupENSG00000197969
BioGRIDVPS13A
IntegromeDBVPS13A
STRING (EMBL)VPS13A
ZODIACVPS13A
Ontologies - Pathways
QuickGOQ96RL7
Ontology : AmiGOprotein binding  intracellular  Golgi to endosome transport  nervous system development  locomotory behavior  protein localization  protein transport  extrinsic component of membrane  dense core granule  social behavior  
Ontology : EGO-EBIprotein binding  intracellular  Golgi to endosome transport  nervous system development  locomotory behavior  protein localization  protein transport  extrinsic component of membrane  dense core granule  social behavior  
Protein Interaction DatabaseVPS13A
Atlas of Cancer Signalling NetworkVPS13A
Wikipedia pathwaysVPS13A
Orthology - Evolution
OrthoDB23230
GeneTree (enSembl)ENSG00000197969
Phylogenetic Trees/Animal Genes : TreeFamVPS13A
Homologs : HomoloGeneVPS13A
Homology/Alignments : Family Browser (UCSC)VPS13A
Gene fusions - Rearrangements
Fusion: TCGAGPR107 9q34.11 VPS13A 9q21.2 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerVPS13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS13A
dbVarVPS13A
ClinVarVPS13A
1000_GenomesVPS13A 
Exome Variant ServerVPS13A
Exome Aggregation Consortium (ExAC)ENSG00000197969
SNP (GeneSNP Utah)VPS13A
SNP : HGBaseVPS13A
Genetic variants : HAPMAPVPS13A
Genomic Variants (DGV)VPS13A [DGVbeta]
Mutations
ICGC Data PortalVPS13A 
TCGA Data PortalVPS13A 
Tumor PortalVPS13A
TCGA Copy Number PortalVPS13A
Somatic Mutations in Cancer : COSMICVPS13A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS13A
DgiDB (Drug Gene Interaction Database)VPS13A
DoCM (Curated mutations)VPS13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS13A (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:79792361-80032399
CONAN: Copy Number AnalysisVPS13A 
Mutations and Diseases : HGMDVPS13A
OMIM200150    605978   
MedgenVPS13A
NextProtQ96RL7 [Medical]
TSGene23230
GENETestsVPS13A
Huge Navigator VPS13A [HugePedia]  VPS13A [HugeCancerGEM]
snp3D : Map Gene to Disease23230
BioCentury BCIQVPS13A
General knowledge
Chemical/Protein Interactions : CTD23230
Chemical/Pharm GKB GenePA26444
Clinical trialVPS13A
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS13A
GoPubMedVPS13A
iHOPVPS13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:44:18 CET 2016

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