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VPS13A (vacuolar protein sorting 13 homolog A (S. cerevisiae))

Identity

Other namesCHAC
CHOREIN
HGNC (Hugo) VPS13A
LocusID (NCBI) 23230
Location 9q21.2
Location_base_pair Starts at 79792361 and ends at 80032399 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)VPS13A   1908
Cards
Entrez_Gene (NCBI)VPS13A  23230  vacuolar protein sorting 13 homolog A (S. cerevisiae)
GeneCards (Weizmann)VPS13A
Ensembl (Hinxton)ENSG00000197969 [Gene_View]  chr9:79792361-80032399 [Contig_View]  VPS13A [Vega]
AceView (NCBI)VPS13A
Genatlas (Paris)VPS13A
WikiGenes23230
SOURCE (Princeton)NM_001018037 NM_001018038 NM_015186 NM_033305
Genomic and cartography
GoldenPath (UCSC)VPS13A  -  9q21.2   chr9:79792361-80032399 +  9q21.2   [Description]    (hg19-Feb_2009)
EnsemblVPS13A - 9q21.2 [CytoView]
Mapping of homologs : NCBIVPS13A [Mapview]
OMIM200150   605978   
Gene and transcription
Genbank (Entrez)AB023203 AB054005 AF337532 AJ608769 AJ626859
RefSeq transcript (Entrez)NM_001018037 NM_001018038 NM_015186 NM_033305
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_008931 NT_008470 NW_001839221 NW_004929366
Consensus coding sequences : CCDS (NCBI)VPS13A
Cluster EST : UnigeneHs.662256 [ NCBI ]
CGAP (NCI)Hs.662256
Alternative Splicing : Fast-db (Paris)GSHG0030204
Alternative Splicing GalleryENSG00000197969
Gene ExpressionVPS13A [ NCBI-GEO ]     VPS13A [ SEEK ]   VPS13A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RL7 (Uniprot)
NextProtQ96RL7  [Medical]
With graphics : InterProQ96RL7
Splice isoforms : SwissVarQ96RL7 (Swissvar)
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Autophagy-rel_C    VPS13    VPS13A_N    VPSAP_dom   
Related proteins : CluSTrQ96RL7
Domain families : Pfam (Sanger)ATG_C (PF09333)    Chorein_N (PF12624)    DUF1162 (PF06650)   
Domain families : Pfam (NCBI)pfam09333    pfam12624    pfam06650   
DMDM Disease mutations23230
Blocks (Seattle)Q96RL7
Human Protein AtlasENSG00000197969
Peptide AtlasQ96RL7
HPRD05814
IPIIPI00873376   IPI00478586   IPI00746613   IPI00604660   IPI01015146   IPI01010006   IPI01012336   IPI01009641   IPI01013797   
Protein Interaction databases
DIP (DOE-UCLA)Q96RL7
IntAct (EBI)Q96RL7
FunCoupENSG00000197969
BioGRIDVPS13A
InParanoidQ96RL7
Interologous Interaction database Q96RL7
IntegromeDBVPS13A
STRING (EMBL)VPS13A
Ontologies - Pathways
Ontology : AmiGOprotein binding  intracellular  Golgi to endosome transport  nervous system development  locomotory behavior  protein localization  cell death  protein transport  dense core granule  social behavior  
Ontology : EGO-EBIprotein binding  intracellular  Golgi to endosome transport  nervous system development  locomotory behavior  protein localization  cell death  protein transport  dense core granule  social behavior  
REACTOMEVPS13A
Protein Interaction DatabaseVPS13A
Wikipedia pathwaysVPS13A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)VPS13A
SNP (GeneSNP Utah)VPS13A
SNP : HGBaseVPS13A
Genetic variants : HAPMAPVPS13A
1000_GenomesVPS13A 
ICGC programENSG00000197969 
Somatic Mutations in Cancer : COSMICVPS13A 
CONAN: Copy Number AnalysisVPS13A 
Mutations and Diseases : HGMDVPS13A
OMIM200150    605978   
GENETestsVPS13A
Disease Genetic AssociationVPS13A
Huge Navigator VPS13A [HugePedia]  VPS13A [HugeCancerGEM]
Genomic VariantsVPS13A  VPS13A [DGVbeta]
Exome VariantVPS13A
dbVarVPS13A
ClinVarVPS13A
snp3D : Map Gene to Disease23230
General knowledge
Homologs : HomoloGeneVPS13A
Homology/Alignments : Family Browser (UCSC)VPS13A
Phylogenetic Trees/Animal Genes : TreeFamVPS13A
Chemical/Protein Interactions : CTD23230
Chemical/Pharm GKB GenePA26444
Clinical trialVPS13A
Cancer Resource (Charite)ENSG00000197969
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineVPS13A
iHOPVPS13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:30:11 CEST 2014

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