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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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VPS13A (vacuolar protein sorting 13 homolog A (S. cerevisiae))


Other namesCHAC
HGNC (Hugo) VPS13A
LocusID (NCBI) 23230
Location 9q21.2
Location_base_pair Starts at 79792361 and ends at 80032399 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)VPS13A   1908
Entrez_Gene (NCBI)VPS13A  23230  vacuolar protein sorting 13 homolog A (S. cerevisiae)
GeneCards (Weizmann)VPS13A
Ensembl hg19 (Hinxton)ENSG00000197969 [Gene_View]  chr9:79792361-80032399 [Contig_View]  VPS13A [Vega]
Ensembl hg38 (Hinxton)ENSG00000197969 [Gene_View]  chr9:79792361-80032399 [Contig_View]  VPS13A [Vega]
ICGC DataPortalENSG00000197969
AceView (NCBI)VPS13A
Genatlas (Paris)VPS13A
SOURCE (Princeton)VPS13A
Genomic and cartography
GoldenPath hg19 (UCSC)VPS13A  -     chr9:79792361-80032399 +  9q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS13A  -     9q21.2   [Description]    (hg38-Dec_2013)
EnsemblVPS13A - 9q21.2 [CytoView hg19]  VPS13A - 9q21.2 [CytoView hg38]
Mapping of homologs : NCBIVPS13A [Mapview hg19]  VPS13A [Mapview hg38]
OMIM200150   605978   
Gene and transcription
Genbank (Entrez)AB023203 AB054005 AF337532 AJ608769 AJ626859
RefSeq transcript (Entrez)NM_001018037 NM_001018038 NM_015186 NM_033305
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_008931 NT_008470 NW_001839221 NW_004929366
Consensus coding sequences : CCDS (NCBI)VPS13A
Cluster EST : UnigeneHs.662256 [ NCBI ]
CGAP (NCI)Hs.662256
Alternative Splicing : Fast-db (Paris)GSHG0030204
Alternative Splicing GalleryENSG00000197969
Gene ExpressionVPS13A [ NCBI-GEO ]     VPS13A [ SEEK ]   VPS13A [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RL7 (Uniprot)
NextProtQ96RL7  [Medical]
With graphics : InterProQ96RL7
Splice isoforms : SwissVarQ96RL7 (Swissvar)
Domains : Interpro (EBI)Autophagy-rel_C    VPS13    VPS13A_N    VPSAP_dom   
Related proteins : CluSTrQ96RL7
Domain families : Pfam (Sanger)ATG_C (PF09333)    Chorein_N (PF12624)    DUF1162 (PF06650)   
Domain families : Pfam (NCBI)pfam09333    pfam12624    pfam06650   
DMDM Disease mutations23230
Blocks (Seattle)Q96RL7
Human Protein AtlasENSG00000197969
Peptide AtlasQ96RL7
IPIIPI00873376   IPI00478586   IPI00746613   IPI00604660   IPI01015146   IPI01010006   IPI01012336   IPI01009641   IPI01013797   
Protein Interaction databases
IntAct (EBI)Q96RL7
Ontologies - Pathways
Ontology : AmiGOprotein binding  intracellular  Golgi to endosome transport  nervous system development  locomotory behavior  protein localization  cell death  protein transport  dense core granule  social behavior  
Ontology : EGO-EBIprotein binding  intracellular  Golgi to endosome transport  nervous system development  locomotory behavior  protein localization  cell death  protein transport  dense core granule  social behavior  
Protein Interaction DatabaseVPS13A
DoCM (Curated mutations)VPS13A
Wikipedia pathwaysVPS13A
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerVPS13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS13A
Exome Variant ServerVPS13A
SNP (GeneSNP Utah)VPS13A
Genetic variants : HAPMAPVPS13A
Genomic Variants (DGV)VPS13A [DGVbeta]
ICGC Data PortalENSG00000197969 
Somatic Mutations in Cancer : COSMICVPS13A 
CONAN: Copy Number AnalysisVPS13A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)9:79792361-80032399
Mutations and Diseases : HGMDVPS13A
OMIM200150    605978   
NextProtQ96RL7 [Medical]
Disease Genetic AssociationVPS13A
Huge Navigator VPS13A [HugePedia]  VPS13A [HugeCancerGEM]
snp3D : Map Gene to Disease23230
DGIdb (Drug Gene Interaction db)VPS13A
General knowledge
Homologs : HomoloGeneVPS13A
Homology/Alignments : Family Browser (UCSC)VPS13A
Phylogenetic Trees/Animal Genes : TreeFamVPS13A
Chemical/Protein Interactions : CTD23230
Chemical/Pharm GKB GenePA26444
Clinical trialVPS13A
Cancer Resource (Charite)ENSG00000197969
Other databases
PubMed35 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 19:20:39 CET 2015

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