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VPS13B (vacuolar protein sorting 13 homolog B)

Identity

Alias (NCBI)CHS1
COH1
HGNC (Hugo) VPS13B
HGNC Previous nameCHS1
 COH1
HGNC Previous nameCohen syndrome 1
 vacuolar protein sorting 13 homolog B (yeast)
LocusID (NCBI) 157680
Atlas_Id 75625
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 99013266 and ends at 99121759 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ALB (4q13.3) / VPS13B (8q22.2)HSP90AA1 (14q32.31) / VPS13B (8q22.2)LRP12 (8q22.3) / VPS13B (8q22.2)
VPS13B (8q22.2) / AKAP7 (6q23.2)VPS13B (8q22.2) / ANKRD46 (8q22.2)VPS13B (8q22.2) / CCDC6 (10q21.2)
VPS13B (8q22.2) / CDADC1 (13q14.2)VPS13B (8q22.2) / CUL4B (Xq24)VPS13B (8q22.2) / DPYS (8q22.3)
VPS13B (8q22.2) / EFR3A (8q24.22)VPS13B (8q22.2) / GDPD1 (17q22)VPS13B (8q22.2) / GMDS (6p25.3)
VPS13B (8q22.2) / LAPTM4B (8q22.1)VPS13B (8q22.2) / MYO9B (19p13.11)VPS13B (8q22.2) / NECAB1 (8q21.3)
VPS13B (8q22.2) / OSR2 (8q22.2)VPS13B (8q22.2) / SGCZ (8p22)VPS13B MYO9B
VPS13B CDADC1VPS13B ANKRD46VPS13B EFR3A
VPS13B OSR2VPS13B NECAB1VPS13B GMDS
VPS13B SGCZVPS13B DPYSVPS13B AKAP7
VPS13B CCDC6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(X;8)(q25;q22) VPS13B/STAG2
t(X;8)(q25;q22) VPS13B/STAG2


External links

Nomenclature
HGNC (Hugo)VPS13B   2183
LRG (Locus Reference Genomic)LRG_351
Cards
Entrez_Gene (NCBI)VPS13B    vacuolar protein sorting 13 homolog B
AliasesCHS1; COH1
GeneCards (Weizmann)VPS13B
Ensembl hg19 (Hinxton)ENSG00000132549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132549 [Gene_View]  ENSG00000132549 [Sequence]  chr8:99013266-99121759 [Contig_View]  VPS13B [Vega]
ICGC DataPortalENSG00000132549
TCGA cBioPortalVPS13B
AceView (NCBI)VPS13B
Genatlas (Paris)VPS13B
SOURCE (Princeton)VPS13B
Genetics Home Reference (NIH)VPS13B
Genomic and cartography
GoldenPath hg38 (UCSC)VPS13B  -     chr8:99013266-99121759 +  8q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS13B  -     8q22.2   [Description]    (hg19-Feb_2009)
GoldenPathVPS13B - 8q22.2 [CytoView hg19]  VPS13B - 8q22.2 [CytoView hg38]
ImmunoBaseENSG00000132549
genome Data Viewer NCBIVPS13B [Mapview hg19]  
OMIM216550   607817   
Gene and transcription
Genbank (Entrez)AB011104 AJ608772 AJ608773 AK000590 AK091431
RefSeq transcript (Entrez)NM_015243 NM_017890 NM_152564 NM_181661 NM_184042
Consensus coding sequences : CCDS (NCBI)VPS13B
Alternative Splicing GalleryENSG00000132549
Gene ExpressionVPS13B [ NCBI-GEO ]   VPS13B [ EBI - ARRAY_EXPRESS ]   VPS13B [ SEEK ]   VPS13B [ MEM ]
Gene Expression Viewer (FireBrowse)VPS13B [ Firebrowse - Broad ]
GenevisibleExpression of VPS13B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157680
GTEX Portal (Tissue expression)VPS13B
Human Protein AtlasENSG00000132549-VPS13B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS13B
Human Protein Atlas [tissue]ENSG00000132549-VPS13B [tissue]
HPRD06379
Protein Interaction databases
BioGRIDVPS13B
STRING (EMBL)VPS13B
ZODIACVPS13B
Ontologies - Pathways
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVPS13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 23:36:27 CEST 2021

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