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VPS16 (VPS16, CORVET/HOPS core subunit)

Identity

Alias_namesvacuolar protein sorting 16 homolog (S. cerevisiae)
Other aliashVPS16
HGNC (Hugo) VPS16
LocusID (NCBI) 64601
Atlas_Id 56300
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2821343 and ends at 2847378 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NXT1 (20p11.21) / VPS16 (20p13)TNS3 (7p12.3) / VPS16 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS16   14584
Cards
Entrez_Gene (NCBI)VPS16  64601  VPS16, CORVET/HOPS core subunit
AliaseshVPS16
GeneCards (Weizmann)VPS16
Ensembl hg19 (Hinxton)ENSG00000215305 [Gene_View]  chr20:2821343-2847378 [Contig_View]  VPS16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000215305 [Gene_View]  chr20:2821343-2847378 [Contig_View]  VPS16 [Vega]
ICGC DataPortalENSG00000215305
TCGA cBioPortalVPS16
AceView (NCBI)VPS16
Genatlas (Paris)VPS16
WikiGenes64601
SOURCE (Princeton)VPS16
Genetics Home Reference (NIH)VPS16
Genomic and cartography
GoldenPath hg19 (UCSC)VPS16  -     chr20:2821343-2847378 +  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS16  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblVPS16 - 20p13 [CytoView hg19]  VPS16 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIVPS16 [Mapview hg19]  VPS16 [Mapview hg38]
OMIM608550   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_022575 NM_080413 NM_080414
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS16
Cluster EST : UnigeneHs.269577 [ NCBI ]
CGAP (NCI)Hs.269577
Alternative Splicing GalleryENSG00000215305
Gene ExpressionVPS16 [ NCBI-GEO ]   VPS16 [ EBI - ARRAY_EXPRESS ]   VPS16 [ SEEK ]   VPS16 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64601
GTEX Portal (Tissue expression)VPS16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H269   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H269  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H269
Splice isoforms : SwissVarQ9H269
PhosPhoSitePlusQ9H269
Domains : Interpro (EBI)VPS16    Vps16_C    Vps16_N   
Domain families : Pfam (Sanger)Vps16_C (PF04840)    Vps16_N (PF04841)   
Domain families : Pfam (NCBI)pfam04840    pfam04841   
Conserved Domain (NCBI)VPS16
DMDM Disease mutations64601
Blocks (Seattle)VPS16
PDB (SRS)4BX9   
PDB (PDBSum)4BX9   
PDB (IMB)4BX9   
PDB (RSDB)4BX9   
Structural Biology KnowledgeBase4BX9   
SCOP (Structural Classification of Proteins)4BX9   
CATH (Classification of proteins structures)4BX9   
SuperfamilyQ9H269
Human Protein AtlasENSG00000215305
Peptide AtlasQ9H269
HPRD12259
IPIIPI00305438   IPI00305439   IPI00816432   IPI00646017   IPI00430772   
Protein Interaction databases
DIP (DOE-UCLA)Q9H269
IntAct (EBI)Q9H269
FunCoupENSG00000215305
BioGRIDVPS16
STRING (EMBL)VPS16
ZODIACVPS16
Ontologies - Pathways
QuickGOQ9H269
Ontology : AmiGOactin binding  protein binding  lysosome  lysosomal membrane  early endosome  late endosome  autophagosome  intracellular protein transport  endosome to lysosome transport  clathrin-coated vesicle  axon  HOPS complex  late endosome membrane  regulation of vacuole fusion, non-autophagic  regulation of SNARE complex assembly  neuronal cell body  actin filament binding  recycling endosome  autophagosome maturation  
Ontology : EGO-EBIactin binding  protein binding  lysosome  lysosomal membrane  early endosome  late endosome  autophagosome  intracellular protein transport  endosome to lysosome transport  clathrin-coated vesicle  axon  HOPS complex  late endosome membrane  regulation of vacuole fusion, non-autophagic  regulation of SNARE complex assembly  neuronal cell body  actin filament binding  recycling endosome  autophagosome maturation  
NDEx NetworkVPS16
Atlas of Cancer Signalling NetworkVPS16
Wikipedia pathwaysVPS16
Orthology - Evolution
OrthoDB64601
GeneTree (enSembl)ENSG00000215305
Phylogenetic Trees/Animal Genes : TreeFamVPS16
HOVERGENQ9H269
HOGENOMQ9H269
Homologs : HomoloGeneVPS16
Homology/Alignments : Family Browser (UCSC)VPS16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS16
dbVarVPS16
ClinVarVPS16
1000_GenomesVPS16 
Exome Variant ServerVPS16
ExAC (Exome Aggregation Consortium)VPS16 (select the gene name)
Genetic variants : HAPMAP64601
Genomic Variants (DGV)VPS16 [DGVbeta]
DECIPHER (Syndromes)20:2821343-2847378  ENSG00000215305
CONAN: Copy Number AnalysisVPS16 
Mutations
ICGC Data PortalVPS16 
TCGA Data PortalVPS16 
Broad Tumor PortalVPS16
OASIS PortalVPS16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS16
DgiDB (Drug Gene Interaction Database)VPS16
DoCM (Curated mutations)VPS16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS16 (select a term)
intoGenVPS16
Cancer3DVPS16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608550   
Orphanet
MedgenVPS16
Genetic Testing Registry VPS16
NextProtQ9H269 [Medical]
TSGene64601
GENETestsVPS16
Huge Navigator VPS16 [HugePedia]
snp3D : Map Gene to Disease64601
BioCentury BCIQVPS16
ClinGenVPS16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64601
Chemical/Pharm GKB GenePA37903
Clinical trialVPS16
Miscellaneous
canSAR (ICR)VPS16 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS16
EVEXVPS16
GoPubMedVPS16
iHOPVPS16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:48 CEST 2017

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