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VPS26B (VPS26, retromer complex component B)

Identity

Alias (NCBI)Pep8b
HGNC (Hugo) VPS26B
HGNC Alias symbMGC10485
Pep8b
HGNC Previous namevacuolar protein sorting 26 homolog B (S. pombe)
LocusID (NCBI) 112936
Atlas_Id 75631
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 134224671 and ends at 134247788 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL4A4 (2q36.3) / VPS26B (11q25)LRP5 (11q13.2) / VPS26B (11q25)VPS26B (11q25) / VPS26B (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VPS26B   28119
Cards
Entrez_Gene (NCBI)VPS26B    VPS26, retromer complex component B
AliasesPep8b
GeneCards (Weizmann)VPS26B
Ensembl hg19 (Hinxton)ENSG00000151502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151502 [Gene_View]  ENSG00000151502 [Sequence]  chr11:134224671-134247788 [Contig_View]  VPS26B [Vega]
ICGC DataPortalENSG00000151502
TCGA cBioPortalVPS26B
AceView (NCBI)VPS26B
Genatlas (Paris)VPS26B
SOURCE (Princeton)VPS26B
Genetics Home Reference (NIH)VPS26B
Genomic and cartography
GoldenPath hg38 (UCSC)VPS26B  -     chr11:134224671-134247788 +  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS26B  -     11q25   [Description]    (hg19-Feb_2009)
GoldenPathVPS26B - 11q25 [CytoView hg19]  VPS26B - 11q25 [CytoView hg38]
ImmunoBaseENSG00000151502
Genome Data Viewer NCBIVPS26B [Mapview hg19]  
OMIM610027   
Gene and transcription
Genbank (Entrez)AF452718 AV735504 BC007799 BC009747 BC013255
RefSeq transcript (Entrez)NM_052875
Consensus coding sequences : CCDS (NCBI)VPS26B
Gene ExpressionVPS26B [ NCBI-GEO ]   VPS26B [ EBI - ARRAY_EXPRESS ]   VPS26B [ SEEK ]   VPS26B [ MEM ]
Gene Expression Viewer (FireBrowse)VPS26B [ Firebrowse - Broad ]
GenevisibleExpression of VPS26B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112936
GTEX Portal (Tissue expression)VPS26B
Human Protein AtlasENSG00000151502-VPS26B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0F5
PhosPhoSitePlusQ4G0F5
Domains : Interpro (EBI)Arrestin_C    Vps26-related   
Domain families : Pfam (Sanger)Vps26 (PF03643)   
Domain families : Pfam (NCBI)pfam03643   
Conserved Domain (NCBI)VPS26B
SuperfamilyQ4G0F5
AlphaFold pdb e-kbQ4G0F5   
Human Protein Atlas [tissue]ENSG00000151502-VPS26B [tissue]
HPRD14395
Protein Interaction databases
DIP (DOE-UCLA)Q4G0F5
IntAct (EBI)Q4G0F5
BioGRIDVPS26B
STRING (EMBL)VPS26B
ZODIACVPS26B
Ontologies - Pathways
QuickGOQ4G0F5
Ontology : AmiGOprotein binding  endosome  early endosome  late endosome  cytosol  intracellular protein transport  regulation of macroautophagy  retromer complex  retromer complex  retromer, cargo-selective complex  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  phagocytic vesicle  cellular response to interferon-gamma  
Ontology : EGO-EBIprotein binding  endosome  early endosome  late endosome  cytosol  intracellular protein transport  regulation of macroautophagy  retromer complex  retromer complex  retromer, cargo-selective complex  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  phagocytic vesicle  cellular response to interferon-gamma  
NDEx NetworkVPS26B
Atlas of Cancer Signalling NetworkVPS26B
Wikipedia pathwaysVPS26B
Orthology - Evolution
OrthoDB112936
GeneTree (enSembl)ENSG00000151502
Phylogenetic Trees/Animal Genes : TreeFamVPS26B
Homologs : HomoloGeneVPS26B
Homology/Alignments : Family Browser (UCSC)VPS26B
Gene fusions - Rearrangements
Fusion : QuiverVPS26B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS26B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS26B
dbVarVPS26B
ClinVarVPS26B
MonarchVPS26B
1000_GenomesVPS26B 
Exome Variant ServerVPS26B
GNOMAD BrowserENSG00000151502
Varsome BrowserVPS26B
ACMGVPS26B variants
VarityQ4G0F5
Genomic Variants (DGV)VPS26B [DGVbeta]
DECIPHERVPS26B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS26B 
Mutations
ICGC Data PortalVPS26B 
TCGA Data PortalVPS26B 
Broad Tumor PortalVPS26B
OASIS PortalVPS26B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS26B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVPS26B
Mutations and Diseases : HGMDVPS26B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVPS26B
DgiDB (Drug Gene Interaction Database)VPS26B
DoCM (Curated mutations)VPS26B
CIViC (Clinical Interpretations of Variants in Cancer)VPS26B
Cancer3DVPS26B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610027   
Orphanet
DisGeNETVPS26B
MedgenVPS26B
Genetic Testing Registry VPS26B
NextProtQ4G0F5 [Medical]
GENETestsVPS26B
Target ValidationVPS26B
Huge Navigator VPS26B [HugePedia]
ClinGenVPS26B
Clinical trials, drugs, therapy
MyCancerGenomeVPS26B
Protein Interactions : CTDVPS26B
Pharm GKB GenePA128394747
PharosQ4G0F5
Clinical trialVPS26B
Miscellaneous
canSAR (ICR)VPS26B
HarmonizomeVPS26B
DataMed IndexVPS26B
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVPS26B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:12 CEST 2021

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