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VPS26B (VPS26, retromer complex component B)

Identity

Alias_namesvacuolar protein sorting 26 homolog B (S. pombe)
Alias_symbol (synonym)MGC10485
Pep8b
Other alias
HGNC (Hugo) VPS26B
LocusID (NCBI) 112936
Atlas_Id 75631
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 134224605 and ends at 134247792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL4A4 (2q36.3) / VPS26B (11q25)LRP5 (11q13.2) / VPS26B (11q25)VPS26B (11q25) / VPS26B (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q13;q25) LRP5/VPS26B

External links

Nomenclature
HGNC (Hugo)VPS26B   28119
Cards
Entrez_Gene (NCBI)VPS26B  112936  VPS26, retromer complex component B
AliasesPep8b
GeneCards (Weizmann)VPS26B
Ensembl hg19 (Hinxton)ENSG00000151502 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151502 [Gene_View]  ENSG00000151502 [Sequence]  chr11:134224605-134247792 [Contig_View]  VPS26B [Vega]
ICGC DataPortalENSG00000151502
TCGA cBioPortalVPS26B
AceView (NCBI)VPS26B
Genatlas (Paris)VPS26B
WikiGenes112936
SOURCE (Princeton)VPS26B
Genetics Home Reference (NIH)VPS26B
Genomic and cartography
GoldenPath hg38 (UCSC)VPS26B  -     chr11:134224605-134247792 +  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS26B  -     11q25   [Description]    (hg19-Feb_2009)
EnsemblVPS26B - 11q25 [CytoView hg19]  VPS26B - 11q25 [CytoView hg38]
Mapping of homologs : NCBIVPS26B [Mapview hg19]  VPS26B [Mapview hg38]
OMIM610027   
Gene and transcription
Genbank (Entrez)AF452718 AV735504 BC007799 BC009747 BC013255
RefSeq transcript (Entrez)NM_052875
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS26B
Cluster EST : UnigeneHs.334684 [ NCBI ]
CGAP (NCI)Hs.334684
Alternative Splicing GalleryENSG00000151502
Gene ExpressionVPS26B [ NCBI-GEO ]   VPS26B [ EBI - ARRAY_EXPRESS ]   VPS26B [ SEEK ]   VPS26B [ MEM ]
Gene Expression Viewer (FireBrowse)VPS26B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112936
GTEX Portal (Tissue expression)VPS26B
Human Protein AtlasENSG00000151502-VPS26B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0F5
Splice isoforms : SwissVarQ4G0F5
PhosPhoSitePlusQ4G0F5
Domains : Interpro (EBI)Vps26-related   
Domain families : Pfam (Sanger)Vps26 (PF03643)   
Domain families : Pfam (NCBI)pfam03643   
Conserved Domain (NCBI)VPS26B
DMDM Disease mutations112936
Blocks (Seattle)VPS26B
SuperfamilyQ4G0F5
Human Protein Atlas [tissue]ENSG00000151502-VPS26B [tissue]
Peptide AtlasQ4G0F5
HPRD14395
IPIIPI00059264   IPI00981595   IPI00978355   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0F5
IntAct (EBI)Q4G0F5
FunCoupENSG00000151502
BioGRIDVPS26B
STRING (EMBL)VPS26B
ZODIACVPS26B
Ontologies - Pathways
QuickGOQ4G0F5
Ontology : AmiGO###############################################################################################################################################################################################################################################################                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                            
NDEx NetworkVPS26B
Atlas of Cancer Signalling NetworkVPS26B
Wikipedia pathwaysVPS26B
Orthology - Evolution
OrthoDB112936
GeneTree (enSembl)ENSG00000151502
Phylogenetic Trees/Animal Genes : TreeFamVPS26B
HOVERGENQ4G0F5
HOGENOMQ4G0F5
Homologs : HomoloGeneVPS26B
Homology/Alignments : Family Browser (UCSC)VPS26B
Gene fusions - Rearrangements
Fusion : QuiverVPS26B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS26B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS26B
dbVarVPS26B
ClinVarVPS26B
1000_GenomesVPS26B 
Exome Variant ServerVPS26B
ExAC (Exome Aggregation Consortium)ENSG00000151502
GNOMAD BrowserENSG00000151502
Varsome BrowserVPS26B
Genetic variants : HAPMAP112936
Genomic Variants (DGV)VPS26B [DGVbeta]
DECIPHERVPS26B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS26B 
Mutations
ICGC Data PortalVPS26B 
TCGA Data PortalVPS26B 
Broad Tumor PortalVPS26B
OASIS PortalVPS26B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS26B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS26B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS26B
DgiDB (Drug Gene Interaction Database)VPS26B
DoCM (Curated mutations)VPS26B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS26B (select a term)
intoGenVPS26B
Cancer3DVPS26B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610027   
Orphanet
DisGeNETVPS26B
MedgenVPS26B
Genetic Testing Registry VPS26B
NextProtQ4G0F5 [Medical]
TSGene112936
GENETestsVPS26B
Target ValidationVPS26B
Huge Navigator VPS26B [HugePedia]
snp3D : Map Gene to Disease112936
BioCentury BCIQVPS26B
ClinGenVPS26B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112936
Chemical/Pharm GKB GenePA128394747
Clinical trialVPS26B
Miscellaneous
canSAR (ICR)VPS26B (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS26B
EVEXVPS26B
GoPubMedVPS26B
iHOPVPS26B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:38:05 CEST 2018
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