| Nomenclature |
|---|
| HGNC (Hugo) | VPS26B 28119 |
| Cards |
|---|
| Entrez_Gene (NCBI) | VPS26B 112936 VPS26, retromer complex component B |
| Aliases | Pep8b |
| GeneCards (Weizmann) | VPS26B |
| Ensembl hg19 (Hinxton) | ENSG00000151502 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000151502 [Gene_View] ENSG00000151502 [Sequence] chr11:134224605-134247792 [Contig_View] VPS26B [Vega] |
| ICGC DataPortal | ENSG00000151502 |
| TCGA cBioPortal | VPS26B |
| AceView (NCBI) | VPS26B |
| Genatlas (Paris) | VPS26B |
| WikiGenes | 112936 |
| SOURCE (Princeton) | VPS26B |
| Genetics Home Reference (NIH) | VPS26B |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | VPS26B - chr11:134224605-134247792 + 11q25 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | VPS26B - 11q25 [Description] (hg19-Feb_2009) |
| Ensembl | VPS26B - 11q25 [CytoView hg19] VPS26B - 11q25 [CytoView hg38] |
| Mapping of homologs : NCBI | VPS26B [Mapview hg19] VPS26B [Mapview hg38] |
| OMIM | 610027 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF452718 AV735504 BC007799 BC009747 BC013255 |
| RefSeq transcript (Entrez) | NM_052875 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | VPS26B |
| Cluster EST : Unigene | Hs.334684 [ NCBI ] |
| CGAP (NCI) | Hs.334684 |
| Alternative Splicing Gallery | ENSG00000151502 |
| Gene Expression | VPS26B [ NCBI-GEO ] VPS26B [ EBI - ARRAY_EXPRESS ]
VPS26B [ SEEK ] VPS26B [ MEM ] |
| Gene Expression Viewer (FireBrowse) | VPS26B [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 112936 |
| GTEX Portal (Tissue expression) | VPS26B |
| Human Protein Atlas | ENSG00000151502-VPS26B [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q4G0F5 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q4G0F5 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q4G0F5 |
| Splice isoforms : SwissVar | Q4G0F5 |
| PhosPhoSitePlus | Q4G0F5 |
| Domains : Interpro (EBI) | Vps26-related |
| Domain families : Pfam (Sanger) | Vps26 (PF03643) |
| Domain families : Pfam (NCBI) | pfam03643 |
| Conserved Domain (NCBI) | VPS26B |
| DMDM Disease mutations | 112936 |
| Blocks (Seattle) | VPS26B |
| Superfamily | Q4G0F5 |
| Human Protein Atlas [tissue] | ENSG00000151502-VPS26B [tissue] |
| Peptide Atlas | Q4G0F5 |
| HPRD | 14395 |
| IPI | IPI00059264 IPI00981595 IPI00978355 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q4G0F5 |
| IntAct (EBI) | Q4G0F5 |
| FunCoup | ENSG00000151502 |
| BioGRID | VPS26B |
| STRING (EMBL) | VPS26B |
| ZODIAC | VPS26B |
| Ontologies - Pathways |
|---|
| QuickGO | Q4G0F5 |
| Ontology : AmiGO | protein binding endosome early endosome late endosome cytosol intracellular protein transport protein transporter activity regulation of macroautophagy retromer complex retromer complex retromer, cargo-selective complex retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi |
| Ontology : EGO-EBI | protein binding endosome early endosome late endosome cytosol intracellular protein transport protein transporter activity regulation of macroautophagy retromer complex retromer complex retromer, cargo-selective complex retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi |
| NDEx Network | VPS26B |
| Atlas of Cancer Signalling Network | VPS26B |
| Wikipedia pathways | VPS26B |
| Orthology - Evolution |
|---|
| OrthoDB | 112936 |
| GeneTree (enSembl) | ENSG00000151502 |
| Phylogenetic Trees/Animal Genes : TreeFam | VPS26B |
| HOGENOM | Q4G0F5 |
| Homologs : HomoloGene | VPS26B |
| Homology/Alignments : Family Browser (UCSC) | VPS26B |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | VPS26B |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | VPS26B [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | VPS26B |
| dbVar | VPS26B |
| ClinVar | VPS26B |
| 1000_Genomes | VPS26B |
| Exome Variant Server | VPS26B |
| ExAC (Exome Aggregation Consortium) | ENSG00000151502 |
| GNOMAD Browser | ENSG00000151502 |
| Varsome Browser | VPS26B |
| Genetic variants : HAPMAP | 112936 |
| Genomic Variants (DGV) | VPS26B [DGVbeta] |
| DECIPHER | VPS26B [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | VPS26B |
| Mutations |
|---|
| ICGC Data Portal | VPS26B |
| TCGA Data Portal | VPS26B |
| Broad Tumor Portal | VPS26B |
| OASIS Portal | VPS26B [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | VPS26B [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | VPS26B |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search VPS26B |
| DgiDB (Drug Gene Interaction Database) | VPS26B |
| DoCM (Curated mutations) | VPS26B (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | VPS26B (select a term) |
| intoGen | VPS26B |
| Cancer3D | VPS26B(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 610027 |
| Orphanet | |
| DisGeNET | VPS26B |
| Medgen | VPS26B |
| Genetic Testing Registry | VPS26B
|
| NextProt | Q4G0F5 [Medical] |
| TSGene | 112936 |
| GENETests | VPS26B |
| Target Validation | VPS26B |
| Huge Navigator |
VPS26B [HugePedia] |
| snp3D : Map Gene to Disease | 112936 |
| BioCentury BCIQ | VPS26B |
| ClinGen | VPS26B |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 112936 |
| Chemical/Pharm GKB Gene | PA128394747 |
| Clinical trial | VPS26B |
| Miscellaneous |
|---|
| canSAR (ICR) | VPS26B (select the gene name) |
| DataMed Index | VPS26B |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 15 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | VPS26B |
| EVEX | VPS26B |
| GoPubMed | VPS26B |
| iHOP | VPS26B |
