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VPS33B (VPS33B, late endosome and lysosome associated)

Identity

Alias_namesvacuolar protein sorting 33B (yeast homolog)
vacuolar protein sorting 33 homolog B (yeast)
Alias_symbol (synonym)FLJ14848
Other alias-
HGNC (Hugo) VPS33B
LocusID (NCBI) 26276
Atlas_Id 56053
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90998416 and ends at 91022621 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRC1 (15q26.1) / VPS33B (15q26.1)VPS33B (15q26.1) / VPS33B (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS33B   12712
LRG (Locus Reference Genomic)LRG_884
Cards
Entrez_Gene (NCBI)VPS33B  26276  VPS33B, late endosome and lysosome associated
Aliases
GeneCards (Weizmann)VPS33B
Ensembl hg19 (Hinxton)ENSG00000184056 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184056 [Gene_View]  chr15:90998416-91022621 [Contig_View]  VPS33B [Vega]
ICGC DataPortalENSG00000184056
TCGA cBioPortalVPS33B
AceView (NCBI)VPS33B
Genatlas (Paris)VPS33B
WikiGenes26276
SOURCE (Princeton)VPS33B
Genetics Home Reference (NIH)VPS33B
Genomic and cartography
GoldenPath hg38 (UCSC)VPS33B  -     chr15:90998416-91022621 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS33B  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblVPS33B - 15q26.1 [CytoView hg19]  VPS33B - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIVPS33B [Mapview hg19]  VPS33B [Mapview hg38]
OMIM208085   608552   
Gene and transcription
Genbank (Entrez)AF201694 AF308803 AJ713428 AK027754 AK074863
RefSeq transcript (Entrez)NM_001289148 NM_001289149 NM_018668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS33B
Cluster EST : UnigeneHs.745007 [ NCBI ]
CGAP (NCI)Hs.745007
Alternative Splicing GalleryENSG00000184056
Gene ExpressionVPS33B [ NCBI-GEO ]   VPS33B [ EBI - ARRAY_EXPRESS ]   VPS33B [ SEEK ]   VPS33B [ MEM ]
Gene Expression Viewer (FireBrowse)VPS33B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26276
GTEX Portal (Tissue expression)VPS33B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H267   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H267  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H267
Splice isoforms : SwissVarQ9H267
PhosPhoSitePlusQ9H267
Domains : Interpro (EBI)Sec-1-like_dom2    Sec1-like   
Domain families : Pfam (Sanger)Sec1 (PF00995)   
Domain families : Pfam (NCBI)pfam00995   
Conserved Domain (NCBI)VPS33B
DMDM Disease mutations26276
Blocks (Seattle)VPS33B
SuperfamilyQ9H267
Human Protein AtlasENSG00000184056
Peptide AtlasQ9H267
HPRD10541
IPIIPI00032905   IPI01014117   IPI01014846   IPI01013742   IPI01026147   
Protein Interaction databases
DIP (DOE-UCLA)Q9H267
IntAct (EBI)Q9H267
FunCoupENSG00000184056
BioGRIDVPS33B
STRING (EMBL)VPS33B
ZODIACVPS33B
Ontologies - Pathways
QuickGOQ9H267
Ontology : AmiGOprotein binding  cytoplasm  lysosome  lysosomal membrane  early endosome  late endosome  vesicle docking involved in exocytosis  endosome organization  endosome to lysosome transport  protein transport  vesicle-mediated transport  AP-3 adaptor complex  clathrin-coated vesicle  HOPS complex  HOPS complex  platelet alpha granule  early endosome membrane  late endosome membrane  melanosome localization  lysosome localization  megakaryocyte development  perinuclear region of cytoplasm  recycling endosome  membrane fusion  platelet alpha granule organization  clathrin complex  regulation of platelet aggregation  autophagosome maturation  
Ontology : EGO-EBIprotein binding  cytoplasm  lysosome  lysosomal membrane  early endosome  late endosome  vesicle docking involved in exocytosis  endosome organization  endosome to lysosome transport  protein transport  vesicle-mediated transport  AP-3 adaptor complex  clathrin-coated vesicle  HOPS complex  HOPS complex  platelet alpha granule  early endosome membrane  late endosome membrane  melanosome localization  lysosome localization  megakaryocyte development  perinuclear region of cytoplasm  recycling endosome  membrane fusion  platelet alpha granule organization  clathrin complex  regulation of platelet aggregation  autophagosome maturation  
NDEx NetworkVPS33B
Atlas of Cancer Signalling NetworkVPS33B
Wikipedia pathwaysVPS33B
Orthology - Evolution
OrthoDB26276
GeneTree (enSembl)ENSG00000184056
Phylogenetic Trees/Animal Genes : TreeFamVPS33B
HOVERGENQ9H267
HOGENOMQ9H267
Homologs : HomoloGeneVPS33B
Homology/Alignments : Family Browser (UCSC)VPS33B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS33B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS33B
dbVarVPS33B
ClinVarVPS33B
1000_GenomesVPS33B 
Exome Variant ServerVPS33B
ExAC (Exome Aggregation Consortium)VPS33B (select the gene name)
Genetic variants : HAPMAP26276
Genomic Variants (DGV)VPS33B [DGVbeta]
DECIPHERVPS33B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS33B 
Mutations
ICGC Data PortalVPS33B 
TCGA Data PortalVPS33B 
Broad Tumor PortalVPS33B
OASIS PortalVPS33B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS33B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS33B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch VPS33B
DgiDB (Drug Gene Interaction Database)VPS33B
DoCM (Curated mutations)VPS33B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS33B (select a term)
intoGenVPS33B
Cancer3DVPS33B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM208085    608552   
Orphanet2459   
MedgenVPS33B
Genetic Testing Registry VPS33B
NextProtQ9H267 [Medical]
TSGene26276
GENETestsVPS33B
Huge Navigator VPS33B [HugePedia]
snp3D : Map Gene to Disease26276
BioCentury BCIQVPS33B
ClinGenVPS33B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26276
Chemical/Pharm GKB GenePA37327
Clinical trialVPS33B
Miscellaneous
canSAR (ICR)VPS33B (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS33B
EVEXVPS33B
GoPubMedVPS33B
iHOPVPS33B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:43:53 CEST 2017

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