Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VPS35 (vacuolar protein sorting 35 homolog (S. cerevisiae))

Identity

Other namesMEM3
PARK17
HGNC (Hugo) VPS35
LocusID (NCBI) 55737
Location 16q11.2
Location_base_pair Starts at 46693589 and ends at 46723144 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)VPS35   13487
Cards
Entrez_Gene (NCBI)VPS35  55737  vacuolar protein sorting 35 homolog (S. cerevisiae)
GeneCards (Weizmann)VPS35
Ensembl (Hinxton) [Gene_View]  chr16:46693589-46723144 [Contig_View]  VPS35 [Vega]
cBioPortalVPS35
AceView (NCBI)VPS35
Genatlas (Paris)VPS35
WikiGenes55737
SOURCE (Princeton)NM_018206
Genomic and cartography
GoldenPath (UCSC)VPS35  -  16q11.2   chr16:46693589-46723144 -  16q11.2   [Description]    (hg19-Feb_2009)
EnsemblVPS35 - 16q11.2 [CytoView]
Mapping of homologs : NCBIVPS35 [Mapview]
OMIM601501   614203   
Gene and transcription
Genbank (Entrez)AF086051 AF175265 AF183418 AF186382 AF191298
RefSeq transcript (Entrez)NM_018206
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_029970 NT_010498 NW_001838287 NW_004929402
Consensus coding sequences : CCDS (NCBI)VPS35
Cluster EST : UnigeneHs.454528 [ NCBI ]
CGAP (NCI)Hs.454528
Alternative Splicing : Fast-db (Paris)GSHG0011821
Gene ExpressionVPS35 [ NCBI-GEO ]     VPS35 [ SEEK ]   VPS35 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QK1 (Uniprot)
NextProtQ96QK1  [Medical]
With graphics : InterProQ96QK1
Splice isoforms : SwissVarQ96QK1 (Swissvar)
Domains : Interpro (EBI)ARM-type_fold [organisation]   Vps35 [organisation]  
Related proteins : CluSTrQ96QK1
Domain families : Pfam (Sanger)Vps35 (PF03635)   
Domain families : Pfam (NCBI)pfam03635   
DMDM Disease mutations55737
Blocks (Seattle)Q96QK1
PDB (SRS)2R17   
PDB (PDBSum)2R17   
PDB (IMB)2R17   
PDB (RSDB)2R17   
Peptide AtlasQ96QK1
HPRD06085
IPIIPI00018931   IPI01010570   
Protein Interaction databases
DIP (DOE-UCLA)Q96QK1
IntAct (EBI)Q96QK1
BioGRIDVPS35
InParanoidQ96QK1
Interologous Interaction database Q96QK1
IntegromeDBVPS35
STRING (EMBL)VPS35
Ontologies - Pathways
Ontology : AmiGOprotein binding  lysosomal membrane  endosome  cytosol  cytosol  cell death  protein transport  retromer complex  retrograde transport, endosome to Golgi  extracellular vesicular exosome  
Ontology : EGO-EBIprotein binding  lysosomal membrane  endosome  cytosol  cytosol  cell death  protein transport  retromer complex  retrograde transport, endosome to Golgi  extracellular vesicular exosome  
Protein Interaction DatabaseVPS35
Wikipedia pathwaysVPS35
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)VPS35
snp3D : Map Gene to Disease55737
SNP (GeneSNP Utah)VPS35
SNP : HGBaseVPS35
Genetic variants : HAPMAPVPS35
Exome VariantVPS35
1000_GenomesVPS35 
Somatic Mutations in Cancer : COSMICVPS35 
CONAN: Copy Number AnalysisVPS35 
Mutations and Diseases : HGMDVPS35
Genomic VariantsVPS35  VPS35 [DGVbeta]
dbVarVPS35
ClinVarVPS35
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601501    614203   
MedgenVPS35
GENETestsVPS35
Disease Genetic AssociationVPS35
Huge Navigator VPS35 [HugePedia]  VPS35 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneVPS35
Homology/Alignments : Family Browser (UCSC)VPS35
Phylogenetic Trees/Animal Genes : TreeFamVPS35
Chemical/Protein Interactions : CTD55737
Chemical/Pharm GKB GenePA37783
Clinical trialVPS35
Other databases
Probes
Litterature
PubMed89 Pubmed reference(s) in Entrez
CoreMineVPS35
iHOPVPS35
OncoSearchVPS35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:21:16 CEST 2014

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