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VPS35 (VPS35 retromer complex component)

Identity

Alias (NCBI)MEM3
PARK17
HGNC (Hugo) VPS35
HGNC Alias symbFLJ10752
MEM3
PARK17
HGNC Previous namevacuolar protein sorting 35 homolog (S. cerevisiae)
 VPS35, retromer complex component
LocusID (NCBI) 55737
Atlas_Id 52597
Location 16q11.2  [Link to chromosome band 16q11]
Location_base_pair Starts at 46656132 and ends at 46689178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD63 (12q13.2) / VPS35 (16q11.2)ORC6 (16q11.2) / VPS35 (16q11.2)PUM2 (2p24.1) / VPS35 (16q11.2)
VPS35 (16q11.2) / DCN (12q21.33)VPS35 (16q11.2) / MYLK3 (16q11.2)VPS35 (16q11.2) / PHKB (16q12.1)
VPS35 (16q11.2) / SLC6A2 (16q12.2)VPS35 (16q11.2) / VPS35 (16q11.2)WAC (10p12.1) / VPS35 (16q11.2)
ORC6 16q11.2 / VPS35 16q11.2VPS35 16q11.2 / PHKB 16q12.1VPS35 16q11.2 / SLC6A2 16q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)VPS35   13487
Cards
Entrez_Gene (NCBI)VPS35    VPS35 retromer complex component
AliasesMEM3; PARK17
GeneCards (Weizmann)VPS35
Ensembl hg19 (Hinxton)ENSG00000069329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000069329 [Gene_View]  ENSG00000069329 [Sequence]  chr16:46656132-46689178 [Contig_View]  VPS35 [Vega]
ICGC DataPortalENSG00000069329
TCGA cBioPortalVPS35
AceView (NCBI)VPS35
Genatlas (Paris)VPS35
SOURCE (Princeton)VPS35
Genetics Home Reference (NIH)VPS35
Genomic and cartography
GoldenPath hg38 (UCSC)VPS35  -     chr16:46656132-46689178 -  16q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS35  -     16q11.2   [Description]    (hg19-Feb_2009)
GoldenPathVPS35 - 16q11.2 [CytoView hg19]  VPS35 - 16q11.2 [CytoView hg38]
ImmunoBaseENSG00000069329
Genome Data Viewer NCBIVPS35 [Mapview hg19]  
OMIM601501   614203   
Gene and transcription
Genbank (Entrez)AF086051 AF175265 AF183418 AF186382 AF191298
RefSeq transcript (Entrez)NM_018206
Consensus coding sequences : CCDS (NCBI)VPS35
Gene ExpressionVPS35 [ NCBI-GEO ]   VPS35 [ EBI - ARRAY_EXPRESS ]   VPS35 [ SEEK ]   VPS35 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS35 [ Firebrowse - Broad ]
GenevisibleExpression of VPS35 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55737
GTEX Portal (Tissue expression)VPS35
Human Protein AtlasENSG00000069329-VPS35 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS35
Human Protein Atlas [tissue]ENSG00000069329-VPS35 [tissue]
HPRD06085
Protein Interaction databases
BioGRIDVPS35
STRING (EMBL)VPS35
ZODIACVPS35
Ontologies - Pathways
Litterature
PubMed178 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVPS35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:05 CEST 2021

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