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VPS36 (vacuolar protein sorting 36 homolog)

Identity

Alias_namesC13orf9
chromosome 13 open reading frame 9
vacuolar protein sorting 36 homolog (yeast)
vacuolar protein sorting 36 homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-145
Eap45
Other aliasEAP45
HGNC (Hugo) VPS36
LocusID (NCBI) 51028
Atlas_Id 54767
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 52412602 and ends at 52450678 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC122 (13q14.11) / VPS36 (13q14.3)VPS36 (13q14.3) / PAIP2B (2p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS36   20312
Cards
Entrez_Gene (NCBI)VPS36  51028  vacuolar protein sorting 36 homolog
AliasesC13orf9; CGI-145; EAP45
GeneCards (Weizmann)VPS36
Ensembl hg19 (Hinxton)ENSG00000136100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136100 [Gene_View]  chr13:52412602-52450678 [Contig_View]  VPS36 [Vega]
ICGC DataPortalENSG00000136100
TCGA cBioPortalVPS36
AceView (NCBI)VPS36
Genatlas (Paris)VPS36
WikiGenes51028
SOURCE (Princeton)VPS36
Genetics Home Reference (NIH)VPS36
Genomic and cartography
GoldenPath hg38 (UCSC)VPS36  -     chr13:52412602-52450678 -  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS36  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblVPS36 - 13q14.3 [CytoView hg19]  VPS36 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBIVPS36 [Mapview hg19]  VPS36 [Mapview hg38]
OMIM610903   
Gene and transcription
Genbank (Entrez)AB208956 AF151903 AI221133 AI352102 AK022911
RefSeq transcript (Entrez)NM_001282168 NM_001282169 NM_016075
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS36
Cluster EST : UnigeneHs.109520 [ NCBI ]
CGAP (NCI)Hs.109520
Alternative Splicing GalleryENSG00000136100
Gene ExpressionVPS36 [ NCBI-GEO ]   VPS36 [ EBI - ARRAY_EXPRESS ]   VPS36 [ SEEK ]   VPS36 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51028
GTEX Portal (Tissue expression)VPS36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VN1
Splice isoforms : SwissVarQ86VN1
PhosPhoSitePlusQ86VN1
Domaine pattern : Prosite (Expaxy)GLUE (PS51495)   
Domains : Interpro (EBI)EAP30    GLUE_dom    PH_dom-like    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)EAP30 (PF04157)    Vps36_ESCRT-II (PF11605)   
Domain families : Pfam (NCBI)pfam04157    pfam11605   
Conserved Domain (NCBI)VPS36
DMDM Disease mutations51028
Blocks (Seattle)VPS36
PDB (SRS)2HTH    2ZME    3CUQ   
PDB (PDBSum)2HTH    2ZME    3CUQ   
PDB (IMB)2HTH    2ZME    3CUQ   
PDB (RSDB)2HTH    2ZME    3CUQ   
Structural Biology KnowledgeBase2HTH    2ZME    3CUQ   
SCOP (Structural Classification of Proteins)2HTH    2ZME    3CUQ   
CATH (Classification of proteins structures)2HTH    2ZME    3CUQ   
SuperfamilyQ86VN1
Human Protein AtlasENSG00000136100
Peptide AtlasQ86VN1
HPRD12620
IPIIPI00328932   IPI00646971   IPI00556417   
Protein Interaction databases
DIP (DOE-UCLA)Q86VN1
IntAct (EBI)Q86VN1
FunCoupENSG00000136100
BioGRIDVPS36
STRING (EMBL)VPS36
ZODIACVPS36
Ontologies - Pathways
QuickGOQ86VN1
Ontology : AmiGOESCRT II complex  protein binding  nucleus  lysosome  endosome  late endosome  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  protein C-terminus binding  endosomal transport  macroautophagy  late endosome membrane  phosphatidylinositol-3-phosphate binding  multivesicular body assembly  ubiquitin binding  protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  extracellular exosome  
Ontology : EGO-EBIESCRT II complex  protein binding  nucleus  lysosome  endosome  late endosome  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  protein C-terminus binding  endosomal transport  macroautophagy  late endosome membrane  phosphatidylinositol-3-phosphate binding  multivesicular body assembly  ubiquitin binding  protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  extracellular exosome  
Pathways : KEGGEndocytosis   
NDEx NetworkVPS36
Atlas of Cancer Signalling NetworkVPS36
Wikipedia pathwaysVPS36
Orthology - Evolution
OrthoDB51028
GeneTree (enSembl)ENSG00000136100
Phylogenetic Trees/Animal Genes : TreeFamVPS36
HOVERGENQ86VN1
HOGENOMQ86VN1
Homologs : HomoloGeneVPS36
Homology/Alignments : Family Browser (UCSC)VPS36
Gene fusions - Rearrangements
Fusion : MitelmanCCDC122/VPS36 [13q14.11/13q14.3]  [del(13)(q14)]  [del(13)(q14q14)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS36
dbVarVPS36
ClinVarVPS36
1000_GenomesVPS36 
Exome Variant ServerVPS36
ExAC (Exome Aggregation Consortium)VPS36 (select the gene name)
Genetic variants : HAPMAP51028
Genomic Variants (DGV)VPS36 [DGVbeta]
DECIPHERVPS36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS36 
Mutations
ICGC Data PortalVPS36 
TCGA Data PortalVPS36 
Broad Tumor PortalVPS36
OASIS PortalVPS36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS36
DgiDB (Drug Gene Interaction Database)VPS36
DoCM (Curated mutations)VPS36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS36 (select a term)
intoGenVPS36
Cancer3DVPS36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610903   
Orphanet
MedgenVPS36
Genetic Testing Registry VPS36
NextProtQ86VN1 [Medical]
TSGene51028
GENETestsVPS36
Target ValidationVPS36
Huge Navigator VPS36 [HugePedia]
snp3D : Map Gene to Disease51028
BioCentury BCIQVPS36
ClinGenVPS36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51028
Chemical/Pharm GKB GenePA134990943
Clinical trialVPS36
Miscellaneous
canSAR (ICR)VPS36 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS36
EVEXVPS36
GoPubMedVPS36
iHOPVPS36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:35 CEST 2017

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