Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VPS37A (vacuolar protein sorting 37 homolog A (S. cerevisiae))

Identity

Other namesHCRP1
PQBP2
SPG53
HGNC (Hugo) VPS37A
LocusID (NCBI) 137492
Location 8p22
Location_base_pair Starts at 17104401 and ends at 17155533 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VPS37A   24928
Cards
Entrez_Gene (NCBI)VPS37A  137492  vacuolar protein sorting 37 homolog A (S. cerevisiae)
GeneCards (Weizmann)VPS37A
Ensembl hg19 (Hinxton)ENSG00000155975 [Gene_View]  chr8:17104401-17155533 [Contig_View]  VPS37A [Vega]
Ensembl hg38 (Hinxton)ENSG00000155975 [Gene_View]  chr8:17104401-17155533 [Contig_View]  VPS37A [Vega]
ICGC DataPortalENSG00000155975
cBioPortalVPS37A
AceView (NCBI)VPS37A
Genatlas (Paris)VPS37A
WikiGenes137492
SOURCE (Princeton)VPS37A
Genomic and cartography
GoldenPath hg19 (UCSC)VPS37A  -     chr8:17104401-17155533 +  8p22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS37A  -     8p22   [Description]    (hg38-Dec_2013)
EnsemblVPS37A - 8p22 [CytoView hg19]  VPS37A - 8p22 [CytoView hg38]
Mapping of homologs : NCBIVPS37A [Mapview hg19]  VPS37A [Mapview hg38]
OMIM609927   614898   
Gene and transcription
Genbank (Entrez)AF547097 AK057204 AK090607 AK124607 AY033079
RefSeq transcript (Entrez)NM_001145152 NM_152415
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_032996 NT_167187 NW_001839126 NW_004929337
Consensus coding sequences : CCDS (NCBI)VPS37A
Cluster EST : UnigeneHs.343873 [ NCBI ]
CGAP (NCI)Hs.343873
Alternative Splicing : Fast-db (Paris)GSHG0028840
Alternative Splicing GalleryENSG00000155975
Gene ExpressionVPS37A [ NCBI-GEO ]     VPS37A [ SEEK ]   VPS37A [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEZ2 (Uniprot)
NextProtQ8NEZ2  [Medical]
With graphics : InterProQ8NEZ2
Splice isoforms : SwissVarQ8NEZ2 (Swissvar)
Domaine pattern : Prosite (Expaxy)VPS37_C (PS51314)   
Domains : Interpro (EBI)Mod_r    UBQ-conjugating_enzyme/RWD   
Related proteins : CluSTrQ8NEZ2
Domain families : Pfam (Sanger)Mod_r (PF07200)   
Domain families : Pfam (NCBI)pfam07200   
DMDM Disease mutations137492
Blocks (Seattle)Q8NEZ2
Human Protein AtlasENSG00000155975
Peptide AtlasQ8NEZ2
HPRD13410
IPIIPI00302660   IPI00845460   IPI00166536   IPI00973879   IPI00974327   IPI00792298   IPI00973942   IPI00976087   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEZ2
IntAct (EBI)Q8NEZ2
FunCoupENSG00000155975
BioGRIDVPS37A
IntegromeDBVPS37A
STRING (EMBL)VPS37A
Ontologies - Pathways
QuickGOQ8NEZ2
Ontology : AmiGOESCRT I complex  nucleus  nucleolus  cytoplasm  centrosome  cell death  endosome membrane  protein transport  viral process  endosomal transport  viral life cycle  virion assembly  viral protein processing  late endosome membrane  ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  intracellular membrane-bounded organelle  membrane organization  intracellular transport of virus  
Ontology : EGO-EBIESCRT I complex  nucleus  nucleolus  cytoplasm  centrosome  cell death  endosome membrane  protein transport  viral process  endosomal transport  viral life cycle  virion assembly  viral protein processing  late endosome membrane  ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  intracellular membrane-bounded organelle  membrane organization  intracellular transport of virus  
Pathways : KEGGEndocytosis   
Protein Interaction DatabaseVPS37A
DoCM (Curated mutations)VPS37A
Wikipedia pathwaysVPS37A
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerVPS37A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS37A
dbVarVPS37A
ClinVarVPS37A
1000_GenomesVPS37A 
Exome Variant ServerVPS37A
SNP (GeneSNP Utah)VPS37A
SNP : HGBaseVPS37A
Genetic variants : HAPMAPVPS37A
Genomic VariantsVPS37A  VPS37A [DGVbeta]
Mutations
ICGC Data PortalENSG00000155975 
Somatic Mutations in Cancer : COSMICVPS37A 
CONAN: Copy Number AnalysisVPS37A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:17104401-17155533
Mutations and Diseases : HGMDVPS37A
OMIM609927    614898   
MedgenVPS37A
NextProtQ8NEZ2 [Medical]
GENETestsVPS37A
Disease Genetic AssociationVPS37A
Huge Navigator VPS37A [HugePedia]  VPS37A [HugeCancerGEM]
snp3D : Map Gene to Disease137492
DGIdb (Drug Gene Interaction db)VPS37A
General knowledge
Homologs : HomoloGeneVPS37A
Homology/Alignments : Family Browser (UCSC)VPS37A
Phylogenetic Trees/Animal Genes : TreeFamVPS37A
Chemical/Protein Interactions : CTD137492
Chemical/Pharm GKB GenePA142670615
Clinical trialVPS37A
Cancer Resource (Charite)ENSG00000155975
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineVPS37A
GoPubMedVPS37A
iHOPVPS37A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 02:16:02 CET 2014

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