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VPS37B (vacuolar protein sorting 37 homolog B (S. cerevisiae))

Identity

Alias_namesvacuolar protein sorting 37B (yeast)
vacuolar protein sorting 37 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ12750
Other alias-
HGNC (Hugo) VPS37B
LocusID (NCBI) 79720
Atlas_Id 75634
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123349875 and ends at 123380712 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DPYSL3 (5q32) / VPS37B (12q24.31)HMGCL (1p36.11) / VPS37B (12q24.31)VPS37B (12q24.31) / RNH1 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS37B   25754
Cards
Entrez_Gene (NCBI)VPS37B  79720  vacuolar protein sorting 37 homolog B (S. cerevisiae)
Aliases
GeneCards (Weizmann)VPS37B
Ensembl hg19 (Hinxton)ENSG00000139722 [Gene_View]  chr12:123349875-123380712 [Contig_View]  VPS37B [Vega]
Ensembl hg38 (Hinxton)ENSG00000139722 [Gene_View]  chr12:123349875-123380712 [Contig_View]  VPS37B [Vega]
ICGC DataPortalENSG00000139722
TCGA cBioPortalVPS37B
AceView (NCBI)VPS37B
Genatlas (Paris)VPS37B
WikiGenes79720
SOURCE (Princeton)VPS37B
Genetics Home Reference (NIH)VPS37B
Genomic and cartography
GoldenPath hg19 (UCSC)VPS37B  -     chr12:123349875-123380712 -  12q24.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS37B  -     12q24.31   [Description]    (hg38-Dec_2013)
EnsemblVPS37B - 12q24.31 [CytoView hg19]  VPS37B - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIVPS37B [Mapview hg19]  VPS37B [Mapview hg38]
OMIM610037   
Gene and transcription
Genbank (Entrez)AK022812 BC005882 BU629695
RefSeq transcript (Entrez)NM_024667
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929386
Consensus coding sequences : CCDS (NCBI)VPS37B
Cluster EST : UnigeneHs.507162 [ NCBI ]
CGAP (NCI)Hs.507162
Alternative Splicing GalleryENSG00000139722
Gene ExpressionVPS37B [ NCBI-GEO ]   VPS37B [ EBI - ARRAY_EXPRESS ]   VPS37B [ SEEK ]   VPS37B [ MEM ]
Gene Expression Viewer (FireBrowse)VPS37B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79720
GTEX Portal (Tissue expression)VPS37B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9H4
Splice isoforms : SwissVarQ9H9H4
PhosPhoSitePlusQ9H9H4
Domaine pattern : Prosite (Expaxy)VPS37_C (PS51314)   
Domains : Interpro (EBI)Mod_r   
Domain families : Pfam (Sanger)Mod_r (PF07200)   
Domain families : Pfam (NCBI)pfam07200   
Conserved Domain (NCBI)VPS37B
DMDM Disease mutations79720
Blocks (Seattle)VPS37B
SuperfamilyQ9H9H4
Human Protein AtlasENSG00000139722
Peptide AtlasQ9H9H4
HPRD07794
IPIIPI00002926   IPI01014913   IPI01014380   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9H4
IntAct (EBI)Q9H9H4
FunCoupENSG00000139722
BioGRIDVPS37B
STRING (EMBL)VPS37B
ZODIACVPS37B
Ontologies - Pathways
QuickGOQ9H9H4
Ontology : AmiGOESCRT I complex  protein binding  cytoplasm  endosome  plasma membrane  endosome membrane  endosome membrane  protein transport  viral process  endosomal transport  viral life cycle  virion assembly  viral protein processing  midbody  late endosome membrane  calcium-dependent protein binding  membrane organization  extracellular exosome  intracellular transport of virus  positive regulation of viral release from host cell  positive regulation of viral budding via host ESCRT complex  
Ontology : EGO-EBIESCRT I complex  protein binding  cytoplasm  endosome  plasma membrane  endosome membrane  endosome membrane  protein transport  viral process  endosomal transport  viral life cycle  virion assembly  viral protein processing  midbody  late endosome membrane  calcium-dependent protein binding  membrane organization  extracellular exosome  intracellular transport of virus  positive regulation of viral release from host cell  positive regulation of viral budding via host ESCRT complex  
Pathways : KEGGEndocytosis   
NDEx NetworkVPS37B
Atlas of Cancer Signalling NetworkVPS37B
Wikipedia pathwaysVPS37B
Orthology - Evolution
OrthoDB79720
GeneTree (enSembl)ENSG00000139722
Phylogenetic Trees/Animal Genes : TreeFamVPS37B
HOVERGENQ9H9H4
HOGENOMQ9H9H4
Homologs : HomoloGeneVPS37B
Homology/Alignments : Family Browser (UCSC)VPS37B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS37B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS37B
dbVarVPS37B
ClinVarVPS37B
1000_GenomesVPS37B 
Exome Variant ServerVPS37B
ExAC (Exome Aggregation Consortium)VPS37B (select the gene name)
Genetic variants : HAPMAP79720
Genomic Variants (DGV)VPS37B [DGVbeta]
DECIPHER (Syndromes)12:123349875-123380712  ENSG00000139722
CONAN: Copy Number AnalysisVPS37B 
Mutations
ICGC Data PortalVPS37B 
TCGA Data PortalVPS37B 
Broad Tumor PortalVPS37B
OASIS PortalVPS37B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS37B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS37B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS37B
DgiDB (Drug Gene Interaction Database)VPS37B
DoCM (Curated mutations)VPS37B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS37B (select a term)
intoGenVPS37B
Cancer3DVPS37B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610037   
Orphanet
MedgenVPS37B
Genetic Testing Registry VPS37B
NextProtQ9H9H4 [Medical]
TSGene79720
GENETestsVPS37B
Huge Navigator VPS37B [HugePedia]
snp3D : Map Gene to Disease79720
BioCentury BCIQVPS37B
ClinGenVPS37B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79720
Chemical/Pharm GKB GenePA142670616
Clinical trialVPS37B
Miscellaneous
canSAR (ICR)VPS37B (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS37B
EVEXVPS37B
GoPubMedVPS37B
iHOPVPS37B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:18 CET 2017

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