Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VPS37D (vacuolar protein sorting 37 homolog D (S. cerevisiae))

Identity

Alias_namesWBSCR24
Williams Beuren syndrome chromosome region 24
vacuolar protein sorting 37D (yeast)
vacuolar protein sorting 37 homolog D (S. cerevisiae)
Alias_symbol (synonym)MGC35352
Other alias
HGNC (Hugo) VPS37D
LocusID (NCBI) 155382
Atlas_Id 75636
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73082174 and ends at 73086440 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS37D   18287
Cards
Entrez_Gene (NCBI)VPS37D  155382  vacuolar protein sorting 37 homolog D (S. cerevisiae)
AliasesWBSCR24
GeneCards (Weizmann)VPS37D
Ensembl hg19 (Hinxton)ENSG00000176428 [Gene_View]  chr7:73082174-73086440 [Contig_View]  VPS37D [Vega]
Ensembl hg38 (Hinxton)ENSG00000176428 [Gene_View]  chr7:73082174-73086440 [Contig_View]  VPS37D [Vega]
ICGC DataPortalENSG00000176428
TCGA cBioPortalVPS37D
AceView (NCBI)VPS37D
Genatlas (Paris)VPS37D
WikiGenes155382
SOURCE (Princeton)VPS37D
Genetics Home Reference (NIH)VPS37D
Genomic and cartography
GoldenPath hg19 (UCSC)VPS37D  -     chr7:73082174-73086440 +  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS37D  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblVPS37D - 7q11.23 [CytoView hg19]  VPS37D - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIVPS37D [Mapview hg19]  VPS37D [Mapview hg38]
OMIM610039   
Gene and transcription
Genbank (Entrez)AY081952 BC029730 BC064621 BC156354 BC157106
RefSeq transcript (Entrez)NM_001077621 NM_152560
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)VPS37D
Cluster EST : UnigeneHs.647037 [ NCBI ]
CGAP (NCI)Hs.647037
Alternative Splicing GalleryENSG00000176428
Gene ExpressionVPS37D [ NCBI-GEO ]   VPS37D [ EBI - ARRAY_EXPRESS ]   VPS37D [ SEEK ]   VPS37D [ MEM ]
Gene Expression Viewer (FireBrowse)VPS37D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155382
GTEX Portal (Tissue expression)VPS37D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XT2
Splice isoforms : SwissVarQ86XT2
PhosPhoSitePlusQ86XT2
Domaine pattern : Prosite (Expaxy)VPS37_C (PS51314)   
Domains : Interpro (EBI)Mod_r   
Domain families : Pfam (Sanger)Mod_r (PF07200)   
Domain families : Pfam (NCBI)pfam07200   
Conserved Domain (NCBI)VPS37D
DMDM Disease mutations155382
Blocks (Seattle)VPS37D
SuperfamilyQ86XT2
Human Protein AtlasENSG00000176428
Peptide AtlasQ86XT2
IPIIPI00926638   IPI00925833   
Protein Interaction databases
DIP (DOE-UCLA)Q86XT2
IntAct (EBI)Q86XT2
FunCoupENSG00000176428
BioGRIDVPS37D
STRING (EMBL)VPS37D
ZODIACVPS37D
Ontologies - Pathways
QuickGOQ86XT2
Ontology : AmiGOESCRT I complex  endosome membrane  protein transport  viral process  endosomal transport  viral life cycle  virion assembly  viral protein processing  late endosome membrane  membrane organization  extracellular exosome  intracellular transport of virus  
Ontology : EGO-EBIESCRT I complex  endosome membrane  protein transport  viral process  endosomal transport  viral life cycle  virion assembly  viral protein processing  late endosome membrane  membrane organization  extracellular exosome  intracellular transport of virus  
Pathways : KEGGEndocytosis   
NDEx NetworkVPS37D
Atlas of Cancer Signalling NetworkVPS37D
Wikipedia pathwaysVPS37D
Orthology - Evolution
OrthoDB155382
GeneTree (enSembl)ENSG00000176428
Phylogenetic Trees/Animal Genes : TreeFamVPS37D
HOVERGENQ86XT2
HOGENOMQ86XT2
Homologs : HomoloGeneVPS37D
Homology/Alignments : Family Browser (UCSC)VPS37D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS37D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS37D
dbVarVPS37D
ClinVarVPS37D
1000_GenomesVPS37D 
Exome Variant ServerVPS37D
ExAC (Exome Aggregation Consortium)VPS37D (select the gene name)
Genetic variants : HAPMAP155382
Genomic Variants (DGV)VPS37D [DGVbeta]
DECIPHER (Syndromes)7:73082174-73086440  ENSG00000176428
CONAN: Copy Number AnalysisVPS37D 
Mutations
ICGC Data PortalVPS37D 
TCGA Data PortalVPS37D 
Broad Tumor PortalVPS37D
OASIS PortalVPS37D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS37D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS37D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS37D
DgiDB (Drug Gene Interaction Database)VPS37D
DoCM (Curated mutations)VPS37D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS37D (select a term)
intoGenVPS37D
Cancer3DVPS37D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610039   
Orphanet
MedgenVPS37D
Genetic Testing Registry VPS37D
NextProtQ86XT2 [Medical]
TSGene155382
GENETestsVPS37D
Huge Navigator VPS37D [HugePedia]
snp3D : Map Gene to Disease155382
BioCentury BCIQVPS37D
ClinGenVPS37D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155382
Chemical/Pharm GKB GenePA38308
Clinical trialVPS37D
Miscellaneous
canSAR (ICR)VPS37D (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS37D
EVEXVPS37D
GoPubMedVPS37D
iHOPVPS37D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:19 CET 2017

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