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VPS50 (VPS50 EARP/GARPII complex subunit)

Identity

Alias_namesCCDC132
coiled-coil domain containing 132
Alias_symbol (synonym)KIAA1861
FLJ20097
DKFZp313I2429
VPS54L
Other alias
HGNC (Hugo) VPS50
LocusID (NCBI) 55610
Atlas_Id 77794
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 92861653 and ends at 92990435 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDH1 (16q22.1) / VPS50 (7q21.3)PRKAG2 (7q36.1) / VPS50 (7q21.3)VPS50 (7q21.3) / CDH1 (16q22.1)
VPS50 (7q21.3) / GLS (2q32.2)VPS50 (7q21.3) / MATR3 (5q31.2)VPS50 (7q21.3) / PPP6R3 (11q13.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VPS50   25956
Cards
Entrez_Gene (NCBI)VPS50  55610  VPS50 EARP/GARPII complex subunit
AliasesCCDC132; VPS54L
GeneCards (Weizmann)VPS50
Ensembl hg19 (Hinxton)ENSG00000004766 [Gene_View]  chr7:92861653-92990435 [Contig_View]  VPS50 [Vega]
Ensembl hg38 (Hinxton)ENSG00000004766 [Gene_View]  chr7:92861653-92990435 [Contig_View]  VPS50 [Vega]
ICGC DataPortalENSG00000004766
TCGA cBioPortalVPS50
AceView (NCBI)VPS50
Genatlas (Paris)VPS50
WikiGenes55610
SOURCE (Princeton)VPS50
Genetics Home Reference (NIH)VPS50
Genomic and cartography
GoldenPath hg19 (UCSC)VPS50  -     chr7:92861653-92990435 +  7q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS50  -     7q21.3   [Description]    (hg38-Dec_2013)
EnsemblVPS50 - 7q21.3 [CytoView hg19]  VPS50 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBIVPS50 [Mapview hg19]  VPS50 [Mapview hg38]
OMIM616465   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001257998 NM_017667 NM_024553
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)VPS50
Cluster EST : UnigeneHs.202424 [ NCBI ]
CGAP (NCI)Hs.202424
Alternative Splicing GalleryENSG00000004766
Gene ExpressionVPS50 [ NCBI-GEO ]   VPS50 [ EBI - ARRAY_EXPRESS ]   VPS50 [ SEEK ]   VPS50 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55610
GTEX Portal (Tissue expression)VPS50
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS50
DMDM Disease mutations55610
Blocks (Seattle)VPS50
Human Protein AtlasENSG00000004766
IPIIPI00553067   IPI00103148   IPI01014743   IPI00925392   IPI01015172   IPI00418185   IPI00924827   IPI00925264   IPI00925633   
Protein Interaction databases
FunCoupENSG00000004766
BioGRIDVPS50
STRING (EMBL)VPS50
ZODIACVPS50
Ontologies - Pathways
Huge Navigator VPS50 [HugePedia]
snp3D : Map Gene to Disease55610
BioCentury BCIQVPS50
ClinGenVPS50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55610
Chemical/Pharm GKB GenePA162381332
Clinical trialVPS50
Miscellaneous
canSAR (ICR)VPS50 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS50
EVEXVPS50
GoPubMedVPS50
iHOPVPS50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:19 CET 2017

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