Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VPS51 (vacuolar protein sorting 51 homolog (S. cerevisiae))

Identity

Alias_namesC11orf3
C11orf2
chromosome 11 open reading frame 3
chromosome 11 open reading frame 2
vacuolar protein sorting 51 homolog (S. cerevisiae)
Alias_symbol (synonym)ANG2
ANG3
FFR
Other alias
HGNC (Hugo) VPS51
LocusID (NCBI) 738
Atlas_Id 75639
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64863587 and ends at 64879332 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS51   1172
Cards
Entrez_Gene (NCBI)VPS51  738  vacuolar protein sorting 51 homolog (S. cerevisiae)
AliasesANG2; ANG3; C11orf2; C11orf3; 
FFR
GeneCards (Weizmann)VPS51
Ensembl hg19 (Hinxton)ENSG00000149823 [Gene_View]  chr11:64863587-64879332 [Contig_View]  VPS51 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149823 [Gene_View]  chr11:64863587-64879332 [Contig_View]  VPS51 [Vega]
ICGC DataPortalENSG00000149823
TCGA cBioPortalVPS51
AceView (NCBI)VPS51
Genatlas (Paris)VPS51
WikiGenes738
SOURCE (Princeton)VPS51
Genetics Home Reference (NIH)VPS51
Genomic and cartography
GoldenPath hg19 (UCSC)VPS51  -     chr11:64863587-64879332 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPS51  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblVPS51 - 11q13.1 [CytoView hg19]  VPS51 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIVPS51 [Mapview hg19]  VPS51 [Mapview hg38]
OMIM615738   
Gene and transcription
Genbank (Entrez)AF024631 AK023941 AK093791 AL833818 AW007399
RefSeq transcript (Entrez)NM_013265
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)VPS51
Cluster EST : UnigeneHs.732951 [ NCBI ]
CGAP (NCI)Hs.732951
Alternative Splicing GalleryENSG00000149823
Gene ExpressionVPS51 [ NCBI-GEO ]   VPS51 [ EBI - ARRAY_EXPRESS ]   VPS51 [ SEEK ]   VPS51 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)738
GTEX Portal (Tissue expression)VPS51
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UID3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UID3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UID3
Splice isoforms : SwissVarQ9UID3
PhosPhoSitePlusQ9UID3
Domains : Interpro (EBI)Cullin_repeat-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS51
DMDM Disease mutations738
Blocks (Seattle)VPS51
PDB (SRS)4J2C   
PDB (PDBSum)4J2C   
PDB (IMB)4J2C   
PDB (RSDB)4J2C   
Structural Biology KnowledgeBase4J2C   
SCOP (Structural Classification of Proteins)4J2C   
CATH (Classification of proteins structures)4J2C   
SuperfamilyQ9UID3
Human Protein AtlasENSG00000149823
Peptide AtlasQ9UID3
HPRD12605
IPIIPI00001710   IPI00607717   IPI00979032   IPI00975906   IPI00978415   IPI00976056   IPI00976612   IPI00976834   IPI00979658   IPI00976637   IPI00983788   
Protein Interaction databases
DIP (DOE-UCLA)Q9UID3
IntAct (EBI)Q9UID3
FunCoupENSG00000149823
BioGRIDVPS51
STRING (EMBL)VPS51
ZODIACVPS51
Ontologies - Pathways
QuickGOQ9UID3
Ontology : AmiGOGARP complex  molecular_function  protein binding  Golgi apparatus  lipid transport  autophagy  protein transport  integral component of membrane  endocytic recycling  retrograde transport, endosome to Golgi  recycling endosome  EARP complex  
Ontology : EGO-EBIGARP complex  molecular_function  protein binding  Golgi apparatus  lipid transport  autophagy  protein transport  integral component of membrane  endocytic recycling  retrograde transport, endosome to Golgi  recycling endosome  EARP complex  
NDEx NetworkVPS51
Atlas of Cancer Signalling NetworkVPS51
Wikipedia pathwaysVPS51
Orthology - Evolution
OrthoDB738
GeneTree (enSembl)ENSG00000149823
Phylogenetic Trees/Animal Genes : TreeFamVPS51
HOVERGENQ9UID3
HOGENOMQ9UID3
Homologs : HomoloGeneVPS51
Homology/Alignments : Family Browser (UCSC)VPS51
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS51
dbVarVPS51
ClinVarVPS51
1000_GenomesVPS51 
Exome Variant ServerVPS51
ExAC (Exome Aggregation Consortium)VPS51 (select the gene name)
Genetic variants : HAPMAP738
Genomic Variants (DGV)VPS51 [DGVbeta]
DECIPHER (Syndromes)11:64863587-64879332  ENSG00000149823
CONAN: Copy Number AnalysisVPS51 
Mutations
ICGC Data PortalVPS51 
TCGA Data PortalVPS51 
Broad Tumor PortalVPS51
OASIS PortalVPS51 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVPS51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS51
DgiDB (Drug Gene Interaction Database)VPS51
DoCM (Curated mutations)VPS51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS51 (select a term)
intoGenVPS51
Cancer3DVPS51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615738   
Orphanet
MedgenVPS51
Genetic Testing Registry VPS51
NextProtQ9UID3 [Medical]
TSGene738
GENETestsVPS51
Huge Navigator VPS51 [HugePedia]
snp3D : Map Gene to Disease738
BioCentury BCIQVPS51
ClinGenVPS51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD738
Chemical/Pharm GKB GenePA25485
Clinical trialVPS51
Miscellaneous
canSAR (ICR)VPS51 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS51
EVEXVPS51
GoPubMedVPS51
iHOPVPS51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:20 CET 2017

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