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VPS8 (VPS8, CORVET complex subunit)

Identity

Alias_namesKIAA0804
KIAA0804
vacuolar protein sorting 8 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ32099
Other alias
HGNC (Hugo) VPS8
LocusID (NCBI) 23355
Atlas_Id 54769
Location 3q27.2  [Link to chromosome band 3q27]
Location_base_pair Starts at 184812143 and ends at 185052614 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FLNB (3p14.3) / VPS8 (3q27.2)MAP3K13 (3q27.2) / VPS8 (3q27.2)TCL1A (14q32.13) / VPS8 (3q27.2)
VPS8 (3q27.2) / ARHGAP39 (8q24.3)VPS8 (3q27.2) / NPHP3 (3q22.1)MAP3K13 3q27.2 / VPS8 3q27.2
VPS8 3q27.2 / ARHGAP39 8q24.3VPS8 3q27.2 / NPHP3 3q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPS8   29122
Cards
Entrez_Gene (NCBI)VPS8  23355  VPS8, CORVET complex subunit
AliasesKIAA0804
GeneCards (Weizmann)VPS8
Ensembl hg19 (Hinxton)ENSG00000156931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156931 [Gene_View]  chr3:184812143-185052614 [Contig_View]  VPS8 [Vega]
ICGC DataPortalENSG00000156931
TCGA cBioPortalVPS8
AceView (NCBI)VPS8
Genatlas (Paris)VPS8
WikiGenes23355
SOURCE (Princeton)VPS8
Genetics Home Reference (NIH)VPS8
Genomic and cartography
GoldenPath hg38 (UCSC)VPS8  -     chr3:184812143-185052614 +  3q27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS8  -     3q27.2   [Description]    (hg19-Feb_2009)
EnsemblVPS8 - 3q27.2 [CytoView hg19]  VPS8 - 3q27.2 [CytoView hg38]
Mapping of homologs : NCBIVPS8 [Mapview hg19]  VPS8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018347 AK022945 AK056661 AK292423 AK309244
RefSeq transcript (Entrez)NM_001009921 NM_001349292 NM_001349293 NM_001349294 NM_001349295 NM_001349296 NM_001349297 NM_001349298 NM_015303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS8
Cluster EST : UnigeneHs.269263 [ NCBI ]
CGAP (NCI)Hs.269263
Alternative Splicing GalleryENSG00000156931
Gene ExpressionVPS8 [ NCBI-GEO ]   VPS8 [ EBI - ARRAY_EXPRESS ]   VPS8 [ SEEK ]   VPS8 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23355
GTEX Portal (Tissue expression)VPS8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3P4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3P4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3P4
Splice isoforms : SwissVarQ8N3P4
PhosPhoSitePlusQ8N3P4
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Quino_amine_DH_bsu    Vps8_central_dom    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Vps8 (PF12816)   
Domain families : Pfam (NCBI)pfam12816   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)VPS8
DMDM Disease mutations23355
Blocks (Seattle)VPS8
SuperfamilyQ8N3P4
Human Protein AtlasENSG00000156931
Peptide AtlasQ8N3P4
HPRD11111
IPIIPI00464985   IPI00549242   IPI00984679   IPI00877058   IPI00925366   IPI00924997   IPI00924777   IPI00924581   IPI00927863   IPI00927675   IPI00927434   IPI00927264   IPI00927449   IPI00927079   IPI00926834   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3P4
IntAct (EBI)Q8N3P4
FunCoupENSG00000156931
BioGRIDVPS8
STRING (EMBL)VPS8
ZODIACVPS8
Ontologies - Pathways
QuickGOQ8N3P4
Ontology : AmiGOprotein binding  early endosome  zinc ion binding  protein transport  CORVET complex  endosomal vesicle fusion  
Ontology : EGO-EBIprotein binding  early endosome  zinc ion binding  protein transport  CORVET complex  endosomal vesicle fusion  
NDEx NetworkVPS8
Atlas of Cancer Signalling NetworkVPS8
Wikipedia pathwaysVPS8
Orthology - Evolution
OrthoDB23355
GeneTree (enSembl)ENSG00000156931
Phylogenetic Trees/Animal Genes : TreeFamVPS8
HOVERGENQ8N3P4
HOGENOMQ8N3P4
Homologs : HomoloGeneVPS8
Homology/Alignments : Family Browser (UCSC)VPS8
Gene fusions - Rearrangements
Fusion : MitelmanFLNB/VPS8 [3p14.3/3q27.2]  [t(3;3)(p14;q27)]  
Fusion : MitelmanMAP3K13/VPS8 [3q27.2/3q27.2]  [t(3;3)(q27;q27)]  
Fusion : MitelmanVPS8/ARHGAP39 [3q27.2/8q24.3]  [t(3;8)(q27;q24)]  
Fusion : MitelmanVPS8/NPHP3 [3q27.2/3q22.1]  [t(3;3)(q22;q27)]  
Fusion: TCGAMAP3K13 3q27.2 VPS8 3q27.2 LUAD
Fusion: TCGAVPS8 3q27.2 ARHGAP39 8q24.3 LGG
Fusion: TCGAVPS8 3q27.2 NPHP3 3q22.1 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS8
dbVarVPS8
ClinVarVPS8
1000_GenomesVPS8 
Exome Variant ServerVPS8
ExAC (Exome Aggregation Consortium)VPS8 (select the gene name)
Genetic variants : HAPMAP23355
Genomic Variants (DGV)VPS8 [DGVbeta]
DECIPHERVPS8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS8 
Mutations
ICGC Data PortalVPS8 
TCGA Data PortalVPS8 
Broad Tumor PortalVPS8
OASIS PortalVPS8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPS8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPS8
DgiDB (Drug Gene Interaction Database)VPS8
DoCM (Curated mutations)VPS8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS8 (select a term)
intoGenVPS8
Cancer3DVPS8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVPS8
Genetic Testing Registry VPS8
NextProtQ8N3P4 [Medical]
TSGene23355
GENETestsVPS8
Huge Navigator VPS8 [HugePedia]
snp3D : Map Gene to Disease23355
BioCentury BCIQVPS8
ClinGenVPS8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23355
Chemical/Pharm GKB GenePA142671617
Clinical trialVPS8
Miscellaneous
canSAR (ICR)VPS8 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS8
EVEXVPS8
GoPubMedVPS8
iHOPVPS8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:43:55 CEST 2017

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