Atlas of Genetics and Cytogenetics in Oncology and Haematology

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VPS9D1-AS1 (VPS9D1 antisense RNA 1)


HGNC (Hugo) VPS9D1-AS1
HGNC Alias symbMYU
HGNC Alias namec-Myc-upregulated lncRNA
LocusID (NCBI) 100128881
Atlas_Id 57280
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89711856 and ends at 89718165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)VPS9D1-AS1   48915
Entrez_Gene (NCBI)VPS9D1-AS1    VPS9D1 antisense RNA 1
GeneCards (Weizmann)VPS9D1-AS1
Ensembl hg19 (Hinxton)ENSG00000261373 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261373 [Gene_View]  ENSG00000261373 [Sequence]  chr16:89711856-89718165 [Contig_View]  VPS9D1-AS1 [Vega]
ICGC DataPortalENSG00000261373
TCGA cBioPortalVPS9D1-AS1
AceView (NCBI)VPS9D1-AS1
Genatlas (Paris)VPS9D1-AS1
SOURCE (Princeton)VPS9D1-AS1
Genetics Home Reference (NIH)VPS9D1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)VPS9D1-AS1  -     chr16:89711856-89718165 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS9D1-AS1  -     16q24.3   [Description]    (hg19-Feb_2009)
GoldenPathVPS9D1-AS1 - 16q24.3 [CytoView hg19]  VPS9D1-AS1 - 16q24.3 [CytoView hg38]
genome Data Viewer NCBIVPS9D1-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK096286 BC061904
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS9D1-AS1
Alternative Splicing GalleryENSG00000261373
Gene ExpressionVPS9D1-AS1 [ NCBI-GEO ]   VPS9D1-AS1 [ EBI - ARRAY_EXPRESS ]   VPS9D1-AS1 [ SEEK ]   VPS9D1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)VPS9D1-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of VPS9D1-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128881
GTEX Portal (Tissue expression)VPS9D1-AS1
Human Protein AtlasENSG00000261373-VPS9D1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS9D1-AS1
Blocks (Seattle)VPS9D1-AS1
Human Protein Atlas [tissue]ENSG00000261373-VPS9D1-AS1 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:52:44 CET 2021

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