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VRTN (vertebrae development associated)

Identity

Alias_namesC14orf115
chromosome 14 open reading frame 115
vertebrae development homolog (pig)
Alias_symbol (synonym)FLJ10811
vertnin
Other alias
HGNC (Hugo) VRTN
LocusID (NCBI) 55237
Atlas_Id 75643
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74348463 and ends at 74360008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JDP2 (14q24.3) / VRTN (14q24.3)RBM25 (14q24.2) / VRTN (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VRTN   20223
Cards
Entrez_Gene (NCBI)VRTN  55237  vertebrae development associated
AliasesC14orf115; vertnin
GeneCards (Weizmann)VRTN
Ensembl hg19 (Hinxton)ENSG00000133980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133980 [Gene_View]  chr14:74348463-74360008 [Contig_View]  VRTN [Vega]
ICGC DataPortalENSG00000133980
TCGA cBioPortalVRTN
AceView (NCBI)VRTN
Genatlas (Paris)VRTN
WikiGenes55237
SOURCE (Princeton)VRTN
Genetics Home Reference (NIH)VRTN
Genomic and cartography
GoldenPath hg38 (UCSC)VRTN  -     chr14:74348463-74360008 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VRTN  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblVRTN - 14q24.3 [CytoView hg19]  VRTN - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIVRTN [Mapview hg19]  VRTN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001673 AK023213 BC053325 CX165172
RefSeq transcript (Entrez)NM_018228
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VRTN
Cluster EST : UnigeneHs.578167 [ NCBI ]
CGAP (NCI)Hs.578167
Alternative Splicing GalleryENSG00000133980
Gene ExpressionVRTN [ NCBI-GEO ]   VRTN [ EBI - ARRAY_EXPRESS ]   VRTN [ SEEK ]   VRTN [ MEM ]
Gene Expression Viewer (FireBrowse)VRTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55237
GTEX Portal (Tissue expression)VRTN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8Y1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8Y1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8Y1
Splice isoforms : SwissVarQ9H8Y1
PhosPhoSitePlusQ9H8Y1
Domains : Interpro (EBI)Homeobox-like    Transposase_8    Trp_repressor/repl_initiator   
Domain families : Pfam (Sanger)HTH_Tnp_1 (PF01527)   
Domain families : Pfam (NCBI)pfam01527   
Conserved Domain (NCBI)VRTN
DMDM Disease mutations55237
Blocks (Seattle)VRTN
SuperfamilyQ9H8Y1
Human Protein AtlasENSG00000133980
Peptide AtlasQ9H8Y1
HPRD16593
IPIIPI00303992   IPI01026091   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8Y1
IntAct (EBI)Q9H8Y1
FunCoupENSG00000133980
BioGRIDVRTN
STRING (EMBL)VRTN
ZODIACVRTN
Ontologies - Pathways
QuickGOQ9H8Y1
Ontology : AmiGOtransposase activity  transposition, DNA-mediated  sequence-specific DNA binding  
Ontology : EGO-EBItransposase activity  transposition, DNA-mediated  sequence-specific DNA binding  
NDEx NetworkVRTN
Atlas of Cancer Signalling NetworkVRTN
Wikipedia pathwaysVRTN
Orthology - Evolution
OrthoDB55237
GeneTree (enSembl)ENSG00000133980
Phylogenetic Trees/Animal Genes : TreeFamVRTN
HOVERGENQ9H8Y1
HOGENOMQ9H8Y1
Homologs : HomoloGeneVRTN
Homology/Alignments : Family Browser (UCSC)VRTN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVRTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VRTN
dbVarVRTN
ClinVarVRTN
1000_GenomesVRTN 
Exome Variant ServerVRTN
ExAC (Exome Aggregation Consortium)VRTN (select the gene name)
Genetic variants : HAPMAP55237
Genomic Variants (DGV)VRTN [DGVbeta]
DECIPHERVRTN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVRTN 
Mutations
ICGC Data PortalVRTN 
TCGA Data PortalVRTN 
Broad Tumor PortalVRTN
OASIS PortalVRTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVRTN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVRTN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VRTN
DgiDB (Drug Gene Interaction Database)VRTN
DoCM (Curated mutations)VRTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VRTN (select a term)
intoGenVRTN
Cancer3DVRTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVRTN
Genetic Testing Registry VRTN
NextProtQ9H8Y1 [Medical]
TSGene55237
GENETestsVRTN
Target ValidationVRTN
Huge Navigator VRTN [HugePedia]
snp3D : Map Gene to Disease55237
BioCentury BCIQVRTN
ClinGenVRTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55237
Chemical/Pharm GKB GenePA134899928
Clinical trialVRTN
Miscellaneous
canSAR (ICR)VRTN (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVRTN
EVEXVRTN
GoPubMedVRTN
iHOPVRTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:43:37 CEST 2017

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