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VSIG1 (V-set and immunoglobulin domain containing 1)

Identity

Alias_symbol (synonym)MGC44287
Other alias1700062D20Rik
GPA34
dJ889N15.1
HGNC (Hugo) VSIG1
LocusID (NCBI) 340547
Atlas_Id 46201
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 108044970 and ends at 108079184 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VSIG1 (Xq22.3) / RPS3 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSIG1   28675
Cards
Entrez_Gene (NCBI)VSIG1  340547  V-set and immunoglobulin domain containing 1
Aliases1700062D20Rik; GPA34; dJ889N15.1
GeneCards (Weizmann)VSIG1
Ensembl hg19 (Hinxton)ENSG00000101842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101842 [Gene_View]  chrX:108044970-108079184 [Contig_View]  VSIG1 [Vega]
ICGC DataPortalENSG00000101842
TCGA cBioPortalVSIG1
AceView (NCBI)VSIG1
Genatlas (Paris)VSIG1
WikiGenes340547
SOURCE (Princeton)VSIG1
Genetics Home Reference (NIH)VSIG1
Genomic and cartography
GoldenPath hg38 (UCSC)VSIG1  -     chrX:108044970-108079184 +  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIG1  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblVSIG1 - Xq22.3 [CytoView hg19]  VSIG1 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBIVSIG1 [Mapview hg19]  VSIG1 [Mapview hg38]
OMIM300620   
Gene and transcription
Genbank (Entrez)AK292472 AK301311 AK301783 AK315846 BC043216
RefSeq transcript (Entrez)NM_001170553 NM_182607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSIG1
Cluster EST : UnigeneHs.177164 [ NCBI ]
CGAP (NCI)Hs.177164
Alternative Splicing GalleryENSG00000101842
Gene ExpressionVSIG1 [ NCBI-GEO ]   VSIG1 [ EBI - ARRAY_EXPRESS ]   VSIG1 [ SEEK ]   VSIG1 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340547
GTEX Portal (Tissue expression)VSIG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XK7
Splice isoforms : SwissVarQ86XK7
PhosPhoSitePlusQ86XK7
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set    Myelin_P0-rel    VSIG1   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)VSIG1
DMDM Disease mutations340547
Blocks (Seattle)VSIG1
SuperfamilyQ86XK7
Human Protein AtlasENSG00000101842
Peptide AtlasQ86XK7
HPRD06655
IPIIPI00257928   IPI00878655   
Protein Interaction databases
DIP (DOE-UCLA)Q86XK7
IntAct (EBI)Q86XK7
FunCoupENSG00000101842
BioGRIDVSIG1
STRING (EMBL)VSIG1
ZODIACVSIG1
Ontologies - Pathways
QuickGOQ86XK7
Ontology : AmiGOepithelial cell morphogenesis  plasma membrane  integral component of membrane  maintenance of gastrointestinal epithelium  
Ontology : EGO-EBIepithelial cell morphogenesis  plasma membrane  integral component of membrane  maintenance of gastrointestinal epithelium  
NDEx NetworkVSIG1
Atlas of Cancer Signalling NetworkVSIG1
Wikipedia pathwaysVSIG1
Orthology - Evolution
OrthoDB340547
GeneTree (enSembl)ENSG00000101842
Phylogenetic Trees/Animal Genes : TreeFamVSIG1
HOVERGENQ86XK7
HOGENOMQ86XK7
Homologs : HomoloGeneVSIG1
Homology/Alignments : Family Browser (UCSC)VSIG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG1
dbVarVSIG1
ClinVarVSIG1
1000_GenomesVSIG1 
Exome Variant ServerVSIG1
ExAC (Exome Aggregation Consortium)VSIG1 (select the gene name)
Genetic variants : HAPMAP340547
Genomic Variants (DGV)VSIG1 [DGVbeta]
DECIPHERVSIG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIG1 
Mutations
ICGC Data PortalVSIG1 
TCGA Data PortalVSIG1 
Broad Tumor PortalVSIG1
OASIS PortalVSIG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSIG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch VSIG1
DgiDB (Drug Gene Interaction Database)VSIG1
DoCM (Curated mutations)VSIG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG1 (select a term)
intoGenVSIG1
Cancer3DVSIG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300620   
Orphanet
MedgenVSIG1
Genetic Testing Registry VSIG1
NextProtQ86XK7 [Medical]
TSGene340547
GENETestsVSIG1
Target ValidationVSIG1
Huge Navigator VSIG1 [HugePedia]
snp3D : Map Gene to Disease340547
BioCentury BCIQVSIG1
ClinGenVSIG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340547
Chemical/Pharm GKB GenePA134944198
Clinical trialVSIG1
Miscellaneous
canSAR (ICR)VSIG1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG1
EVEXVSIG1
GoPubMedVSIG1
iHOPVSIG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 13:02:37 CEST 2017

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