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VSIG10 (V-set and immunoglobulin domain containing 10)

Identity

Other alias-
HGNC (Hugo) VSIG10
LocusID (NCBI) 54621
Atlas_Id 75644
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 118063593 and ends at 118104005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RGPD6 (2q13) / VSIG10 (12q24.23)TANC1 (2q24.2) / VSIG10 (12q24.23)WSB2 (12q24.23) / VSIG10 (12q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSIG10   26078
Cards
Entrez_Gene (NCBI)VSIG10  54621  V-set and immunoglobulin domain containing 10
Aliases
GeneCards (Weizmann)VSIG10
Ensembl hg19 (Hinxton)ENSG00000176834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176834 [Gene_View]  chr12:118063593-118104005 [Contig_View]  VSIG10 [Vega]
ICGC DataPortalENSG00000176834
TCGA cBioPortalVSIG10
AceView (NCBI)VSIG10
Genatlas (Paris)VSIG10
WikiGenes54621
SOURCE (Princeton)VSIG10
Genetics Home Reference (NIH)VSIG10
Genomic and cartography
GoldenPath hg38 (UCSC)VSIG10  -     chr12:118063593-118104005 -  12q24.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIG10  -     12q24.23   [Description]    (hg19-Feb_2009)
EnsemblVSIG10 - 12q24.23 [CytoView hg19]  VSIG10 - 12q24.23 [CytoView hg38]
Mapping of homologs : NCBIVSIG10 [Mapview hg19]  VSIG10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000681 AK094977 BC001437 BC028698 BC034471
RefSeq transcript (Entrez)NM_019086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSIG10
Cluster EST : UnigeneHs.187624 [ NCBI ]
CGAP (NCI)Hs.187624
Alternative Splicing GalleryENSG00000176834
Gene ExpressionVSIG10 [ NCBI-GEO ]   VSIG10 [ EBI - ARRAY_EXPRESS ]   VSIG10 [ SEEK ]   VSIG10 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54621
GTEX Portal (Tissue expression)VSIG10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Z9
Splice isoforms : SwissVarQ8N0Z9
PhosPhoSitePlusQ8N0Z9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set    Immunoglobulin   
Domain families : Pfam (Sanger)ig (PF00047)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam00047    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)VSIG10
DMDM Disease mutations54621
Blocks (Seattle)VSIG10
SuperfamilyQ8N0Z9
Human Protein AtlasENSG00000176834
Peptide AtlasQ8N0Z9
HPRD07941
IPIIPI00386831   IPI00745654   IPI01011529   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Z9
IntAct (EBI)Q8N0Z9
FunCoupENSG00000176834
BioGRIDVSIG10
STRING (EMBL)VSIG10
ZODIACVSIG10
Ontologies - Pathways
QuickGOQ8N0Z9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkVSIG10
Atlas of Cancer Signalling NetworkVSIG10
Wikipedia pathwaysVSIG10
Orthology - Evolution
OrthoDB54621
GeneTree (enSembl)ENSG00000176834
Phylogenetic Trees/Animal Genes : TreeFamVSIG10
HOVERGENQ8N0Z9
HOGENOMQ8N0Z9
Homologs : HomoloGeneVSIG10
Homology/Alignments : Family Browser (UCSC)VSIG10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG10
dbVarVSIG10
ClinVarVSIG10
1000_GenomesVSIG10 
Exome Variant ServerVSIG10
ExAC (Exome Aggregation Consortium)VSIG10 (select the gene name)
Genetic variants : HAPMAP54621
Genomic Variants (DGV)VSIG10 [DGVbeta]
DECIPHERVSIG10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIG10 
Mutations
ICGC Data PortalVSIG10 
TCGA Data PortalVSIG10 
Broad Tumor PortalVSIG10
OASIS PortalVSIG10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSIG10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSIG10
DgiDB (Drug Gene Interaction Database)VSIG10
DoCM (Curated mutations)VSIG10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG10 (select a term)
intoGenVSIG10
Cancer3DVSIG10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSIG10
Genetic Testing Registry VSIG10
NextProtQ8N0Z9 [Medical]
TSGene54621
GENETestsVSIG10
Target ValidationVSIG10
Huge Navigator VSIG10 [HugePedia]
snp3D : Map Gene to Disease54621
BioCentury BCIQVSIG10
ClinGenVSIG10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54621
Chemical/Pharm GKB GenePA165513585
Clinical trialVSIG10
Miscellaneous
canSAR (ICR)VSIG10 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG10
EVEXVSIG10
GoPubMedVSIG10
iHOPVSIG10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:42 CEST 2017

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