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VSIG10L (V-set and immunoglobulin domain containing 10 like)

Identity

Other alias-
HGNC (Hugo) VSIG10L
LocusID (NCBI) 147645
Atlas_Id 75645
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51331541 and ends at 51342124 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSIG10L   27111
Cards
Entrez_Gene (NCBI)VSIG10L  147645  V-set and immunoglobulin domain containing 10 like
Aliases
GeneCards (Weizmann)VSIG10L
Ensembl hg19 (Hinxton)ENSG00000186806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186806 [Gene_View]  chr19:51331541-51342124 [Contig_View]  VSIG10L [Vega]
ICGC DataPortalENSG00000186806
TCGA cBioPortalVSIG10L
AceView (NCBI)VSIG10L
Genatlas (Paris)VSIG10L
WikiGenes147645
SOURCE (Princeton)VSIG10L
Genetics Home Reference (NIH)VSIG10L
Genomic and cartography
GoldenPath hg38 (UCSC)VSIG10L  -     chr19:51331541-51342124 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIG10L  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblVSIG10L - 19q13.41 [CytoView hg19]  VSIG10L - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIVSIG10L [Mapview hg19]  VSIG10L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086436 BC016993 BC032383 BC049212 BC131493
RefSeq transcript (Entrez)NM_001163922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSIG10L
Cluster EST : UnigeneHs.293236 [ NCBI ]
CGAP (NCI)Hs.293236
Alternative Splicing GalleryENSG00000186806
Gene ExpressionVSIG10L [ NCBI-GEO ]   VSIG10L [ EBI - ARRAY_EXPRESS ]   VSIG10L [ SEEK ]   VSIG10L [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG10L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147645
GTEX Portal (Tissue expression)VSIG10L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VR7
Splice isoforms : SwissVarQ86VR7
PhosPhoSitePlusQ86VR7
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)VSIG10L
DMDM Disease mutations147645
Blocks (Seattle)VSIG10L
SuperfamilyQ86VR7
Human Protein AtlasENSG00000186806
Peptide AtlasQ86VR7
IPIIPI00328960   IPI00966925   IPI01014135   
Protein Interaction databases
DIP (DOE-UCLA)Q86VR7
IntAct (EBI)Q86VR7
FunCoupENSG00000186806
BioGRIDVSIG10L
STRING (EMBL)VSIG10L
ZODIACVSIG10L
Ontologies - Pathways
QuickGOQ86VR7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkVSIG10L
Atlas of Cancer Signalling NetworkVSIG10L
Wikipedia pathwaysVSIG10L
Orthology - Evolution
OrthoDB147645
GeneTree (enSembl)ENSG00000186806
Phylogenetic Trees/Animal Genes : TreeFamVSIG10L
HOVERGENQ86VR7
HOGENOMQ86VR7
Homologs : HomoloGeneVSIG10L
Homology/Alignments : Family Browser (UCSC)VSIG10L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG10L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG10L
dbVarVSIG10L
ClinVarVSIG10L
1000_GenomesVSIG10L 
Exome Variant ServerVSIG10L
ExAC (Exome Aggregation Consortium)VSIG10L (select the gene name)
Genetic variants : HAPMAP147645
Genomic Variants (DGV)VSIG10L [DGVbeta]
DECIPHERVSIG10L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIG10L 
Mutations
ICGC Data PortalVSIG10L 
TCGA Data PortalVSIG10L 
Broad Tumor PortalVSIG10L
OASIS PortalVSIG10L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG10L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSIG10L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSIG10L
DgiDB (Drug Gene Interaction Database)VSIG10L
DoCM (Curated mutations)VSIG10L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG10L (select a term)
intoGenVSIG10L
Cancer3DVSIG10L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSIG10L
Genetic Testing Registry VSIG10L
NextProtQ86VR7 [Medical]
TSGene147645
GENETestsVSIG10L
Target ValidationVSIG10L
Huge Navigator VSIG10L [HugePedia]
snp3D : Map Gene to Disease147645
BioCentury BCIQVSIG10L
ClinGenVSIG10L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147645
Chemical/Pharm GKB GenePA165394673
Clinical trialVSIG10L
Miscellaneous
canSAR (ICR)VSIG10L (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG10L
EVEXVSIG10L
GoPubMedVSIG10L
iHOPVSIG10L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:42 CEST 2017

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