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VSIG2 (V-set and immunoglobulin domain containing 2)

Identity

Alias_symbol (synonym)CTXL
CTH
Other alias2210413P10Rik
HGNC (Hugo) VSIG2
LocusID (NCBI) 23584
Atlas_Id 75646
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124617370 and ends at 124622109 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VSIG2 (11q24.2) / VSIG2 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSIG2   17149
Cards
Entrez_Gene (NCBI)VSIG2  23584  V-set and immunoglobulin domain containing 2
Aliases2210413P10Rik; CTH; CTXL
GeneCards (Weizmann)VSIG2
Ensembl hg19 (Hinxton)ENSG00000019102 [Gene_View]  chr11:124617370-124622109 [Contig_View]  VSIG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000019102 [Gene_View]  chr11:124617370-124622109 [Contig_View]  VSIG2 [Vega]
ICGC DataPortalENSG00000019102
TCGA cBioPortalVSIG2
AceView (NCBI)VSIG2
Genatlas (Paris)VSIG2
WikiGenes23584
SOURCE (Princeton)VSIG2
Genetics Home Reference (NIH)VSIG2
Genomic and cartography
GoldenPath hg19 (UCSC)VSIG2  -     chr11:124617370-124622109 -  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VSIG2  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblVSIG2 - 11q24.2 [CytoView hg19]  VSIG2 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIVSIG2 [Mapview hg19]  VSIG2 [Mapview hg38]
OMIM606011   
Gene and transcription
Genbank (Entrez)AK000460 AY358897 BC007313 BC012567 EU176386
RefSeq transcript (Entrez)NM_014312
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)VSIG2
Cluster EST : UnigeneHs.112377 [ NCBI ]
CGAP (NCI)Hs.112377
Alternative Splicing GalleryENSG00000019102
Gene ExpressionVSIG2 [ NCBI-GEO ]   VSIG2 [ EBI - ARRAY_EXPRESS ]   VSIG2 [ SEEK ]   VSIG2 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23584
GTEX Portal (Tissue expression)VSIG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IQ7
Splice isoforms : SwissVarQ96IQ7
PhosPhoSitePlusQ96IQ7
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)I-set (PF07679)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07679    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)VSIG2
DMDM Disease mutations23584
Blocks (Seattle)VSIG2
SuperfamilyQ96IQ7
Human Protein AtlasENSG00000019102
Peptide AtlasQ96IQ7
HPRD08390
IPIIPI00101797   IPI00607813   
Protein Interaction databases
DIP (DOE-UCLA)Q96IQ7
IntAct (EBI)Q96IQ7
FunCoupENSG00000019102
BioGRIDVSIG2
STRING (EMBL)VSIG2
ZODIACVSIG2
Ontologies - Pathways
QuickGOQ96IQ7
Ontology : AmiGOintegral component of plasma membrane  membrane  
Ontology : EGO-EBIintegral component of plasma membrane  membrane  
NDEx NetworkVSIG2
Atlas of Cancer Signalling NetworkVSIG2
Wikipedia pathwaysVSIG2
Orthology - Evolution
OrthoDB23584
GeneTree (enSembl)ENSG00000019102
Phylogenetic Trees/Animal Genes : TreeFamVSIG2
HOVERGENQ96IQ7
HOGENOMQ96IQ7
Homologs : HomoloGeneVSIG2
Homology/Alignments : Family Browser (UCSC)VSIG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG2
dbVarVSIG2
ClinVarVSIG2
1000_GenomesVSIG2 
Exome Variant ServerVSIG2
ExAC (Exome Aggregation Consortium)VSIG2 (select the gene name)
Genetic variants : HAPMAP23584
Genomic Variants (DGV)VSIG2 [DGVbeta]
DECIPHER (Syndromes)11:124617370-124622109  ENSG00000019102
CONAN: Copy Number AnalysisVSIG2 
Mutations
ICGC Data PortalVSIG2 
TCGA Data PortalVSIG2 
Broad Tumor PortalVSIG2
OASIS PortalVSIG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSIG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSIG2
DgiDB (Drug Gene Interaction Database)VSIG2
DoCM (Curated mutations)VSIG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG2 (select a term)
intoGenVSIG2
Cancer3DVSIG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606011   
Orphanet
MedgenVSIG2
Genetic Testing Registry VSIG2
NextProtQ96IQ7 [Medical]
TSGene23584
GENETestsVSIG2
Huge Navigator VSIG2 [HugePedia]
snp3D : Map Gene to Disease23584
BioCentury BCIQVSIG2
ClinGenVSIG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23584
Chemical/Pharm GKB GenePA134937463
Clinical trialVSIG2
Miscellaneous
canSAR (ICR)VSIG2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG2
EVEXVSIG2
GoPubMedVSIG2
iHOPVSIG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:51:21 CET 2017

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