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VSIG4 (V-set and immunoglobulin domain containing 4)

Identity

Alias_symbol (synonym)Z39IG
Other aliasCRIg
HGNC (Hugo) VSIG4
LocusID (NCBI) 11326
Atlas_Id 54897
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 66021738 and ends at 66040125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATRX (Xq21.1) / VSIG4 (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSIG4   17032
Cards
Entrez_Gene (NCBI)VSIG4  11326  V-set and immunoglobulin domain containing 4
AliasesCRIg; Z39IG
GeneCards (Weizmann)VSIG4
Ensembl hg19 (Hinxton)ENSG00000155659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155659 [Gene_View]  chrX:66021738-66040125 [Contig_View]  VSIG4 [Vega]
ICGC DataPortalENSG00000155659
TCGA cBioPortalVSIG4
AceView (NCBI)VSIG4
Genatlas (Paris)VSIG4
WikiGenes11326
SOURCE (Princeton)VSIG4
Genetics Home Reference (NIH)VSIG4
Genomic and cartography
GoldenPath hg38 (UCSC)VSIG4  -     chrX:66021738-66040125 -  Xq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIG4  -     Xq12   [Description]    (hg19-Feb_2009)
EnsemblVSIG4 - Xq12 [CytoView hg19]  VSIG4 - Xq12 [CytoView hg38]
Mapping of homologs : NCBIVSIG4 [Mapview hg19]  VSIG4 [Mapview hg38]
OMIM300353   
Gene and transcription
Genbank (Entrez)AJ132502 AK075153 AK075171 AK293215 AK297050
RefSeq transcript (Entrez)NM_001100431 NM_001184830 NM_001184831 NM_001257403 NM_007268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSIG4
Cluster EST : UnigeneHs.8904 [ NCBI ]
CGAP (NCI)Hs.8904
Alternative Splicing GalleryENSG00000155659
Gene ExpressionVSIG4 [ NCBI-GEO ]   VSIG4 [ EBI - ARRAY_EXPRESS ]   VSIG4 [ SEEK ]   VSIG4 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11326
GTEX Portal (Tissue expression)VSIG4
Human Protein AtlasENSG00000155659-VSIG4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y279   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y279  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y279
Splice isoforms : SwissVarQ9Y279
PhosPhoSitePlusQ9Y279
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)VSIG4
DMDM Disease mutations11326
Blocks (Seattle)VSIG4
PDB (SRS)2ICC    2ICE    2ICF    5IMK   
PDB (PDBSum)2ICC    2ICE    2ICF    5IMK   
PDB (IMB)2ICC    2ICE    2ICF    5IMK   
PDB (RSDB)2ICC    2ICE    2ICF    5IMK   
Structural Biology KnowledgeBase2ICC    2ICE    2ICF    5IMK   
SCOP (Structural Classification of Proteins)2ICC    2ICE    2ICF    5IMK   
CATH (Classification of proteins structures)2ICC    2ICE    2ICF    5IMK   
SuperfamilyQ9Y279
Human Protein Atlas [tissue]ENSG00000155659-VSIG4 [tissue]
Peptide AtlasQ9Y279
HPRD02286
IPIIPI00027038   IPI00552123   IPI00641261   IPI00940517   IPI00642844   IPI00643768   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y279
IntAct (EBI)Q9Y279
FunCoupENSG00000155659
BioGRIDVSIG4
STRING (EMBL)VSIG4
ZODIACVSIG4
Ontologies - Pathways
QuickGOQ9Y279
Ontology : AmiGOcomplement activation, alternative pathway  integral component of membrane  negative regulation of interleukin-2 production  negative regulation of T cell proliferation  extracellular exosome  
Ontology : EGO-EBIcomplement activation, alternative pathway  integral component of membrane  negative regulation of interleukin-2 production  negative regulation of T cell proliferation  extracellular exosome  
NDEx NetworkVSIG4
Atlas of Cancer Signalling NetworkVSIG4
Wikipedia pathwaysVSIG4
Orthology - Evolution
OrthoDB11326
GeneTree (enSembl)ENSG00000155659
Phylogenetic Trees/Animal Genes : TreeFamVSIG4
HOVERGENQ9Y279
HOGENOMQ9Y279
Homologs : HomoloGeneVSIG4
Homology/Alignments : Family Browser (UCSC)VSIG4
Gene fusions - Rearrangements
Tumor Fusion PortalVSIG4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG4
dbVarVSIG4
ClinVarVSIG4
1000_GenomesVSIG4 
Exome Variant ServerVSIG4
ExAC (Exome Aggregation Consortium)ENSG00000155659
GNOMAD BrowserENSG00000155659
Genetic variants : HAPMAP11326
Genomic Variants (DGV)VSIG4 [DGVbeta]
DECIPHERVSIG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIG4 
Mutations
ICGC Data PortalVSIG4 
TCGA Data PortalVSIG4 
Broad Tumor PortalVSIG4
OASIS PortalVSIG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSIG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch VSIG4
DgiDB (Drug Gene Interaction Database)VSIG4
DoCM (Curated mutations)VSIG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG4 (select a term)
intoGenVSIG4
Cancer3DVSIG4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300353   
Orphanet
DisGeNETVSIG4
MedgenVSIG4
Genetic Testing Registry VSIG4
NextProtQ9Y279 [Medical]
TSGene11326
GENETestsVSIG4
Target ValidationVSIG4
Huge Navigator VSIG4 [HugePedia]
snp3D : Map Gene to Disease11326
BioCentury BCIQVSIG4
ClinGenVSIG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11326
Chemical/Pharm GKB GenePA134986421
Clinical trialVSIG4
Miscellaneous
canSAR (ICR)VSIG4 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG4
EVEXVSIG4
GoPubMedVSIG4
iHOPVSIG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:41:27 CET 2017

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