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VSIG4 (V-set and immunoglobulin domain containing 4)

Identity

Alias (NCBI)CRIg
Z39IG
HGNC (Hugo) VSIG4
HGNC Alias symbZ39IG
CRIg
HGNC Alias namecomplement receptor of the immunoglobulin superfamily
LocusID (NCBI) 11326
Atlas_Id 54897
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 66021738 and ends at 66040080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATRX (Xq21.1) / VSIG4 (Xq12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VSIG4   17032
Cards
Entrez_Gene (NCBI)VSIG4    V-set and immunoglobulin domain containing 4
AliasesCRIg; Z39IG
GeneCards (Weizmann)VSIG4
Ensembl hg19 (Hinxton)ENSG00000155659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155659 [Gene_View]  ENSG00000155659 [Sequence]  chrX:66021738-66040080 [Contig_View]  VSIG4 [Vega]
ICGC DataPortalENSG00000155659
TCGA cBioPortalVSIG4
AceView (NCBI)VSIG4
Genatlas (Paris)VSIG4
SOURCE (Princeton)VSIG4
Genetics Home Reference (NIH)VSIG4
Genomic and cartography
GoldenPath hg38 (UCSC)VSIG4  -     chrX:66021738-66040080 -  Xq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIG4  -     Xq12   [Description]    (hg19-Feb_2009)
GoldenPathVSIG4 - Xq12 [CytoView hg19]  VSIG4 - Xq12 [CytoView hg38]
ImmunoBaseENSG00000155659
Genome Data Viewer NCBIVSIG4 [Mapview hg19]  
OMIM300353   
Gene and transcription
Genbank (Entrez)AJ132502 AK075153 AK075171 AK293215 AK297050
RefSeq transcript (Entrez)NM_001100431 NM_001184830 NM_001184831 NM_001257403 NM_007268
Consensus coding sequences : CCDS (NCBI)VSIG4
Gene ExpressionVSIG4 [ NCBI-GEO ]   VSIG4 [ EBI - ARRAY_EXPRESS ]   VSIG4 [ SEEK ]   VSIG4 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG4 [ Firebrowse - Broad ]
GenevisibleExpression of VSIG4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11326
GTEX Portal (Tissue expression)VSIG4
Human Protein AtlasENSG00000155659-VSIG4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y279   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y279  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y279
PhosPhoSitePlusQ9Y279
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set    VSIG4    VSIG4_IgV   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)VSIG4
PDB (RSDB)2ICC    2ICE    2ICF    5IMK    5IML   
PDB Europe2ICC    2ICE    2ICF    5IMK    5IML   
PDB (PDBSum)2ICC    2ICE    2ICF    5IMK    5IML   
PDB (IMB)2ICC    2ICE    2ICF    5IMK    5IML   
Structural Biology KnowledgeBase2ICC    2ICE    2ICF    5IMK    5IML   
SCOP (Structural Classification of Proteins)2ICC    2ICE    2ICF    5IMK    5IML   
CATH (Classification of proteins structures)2ICC    2ICE    2ICF    5IMK    5IML   
SuperfamilyQ9Y279
AlphaFold pdb e-kbQ9Y279   
Human Protein Atlas [tissue]ENSG00000155659-VSIG4 [tissue]
HPRD02286
Protein Interaction databases
DIP (DOE-UCLA)Q9Y279
IntAct (EBI)Q9Y279
BioGRIDVSIG4
STRING (EMBL)VSIG4
ZODIACVSIG4
Ontologies - Pathways
QuickGOQ9Y279
Ontology : AmiGOcomplement component C3b binding  complement component C3b binding  protein binding  complement activation, alternative pathway  integral component of membrane  negative regulation of interleukin-2 production  protein-containing complex  negative regulation of T cell proliferation  negative regulation of macrophage activation  negative regulation of complement activation, alternative pathway  negative regulation of complement activation, alternative pathway  
Ontology : EGO-EBIcomplement component C3b binding  complement component C3b binding  protein binding  complement activation, alternative pathway  integral component of membrane  negative regulation of interleukin-2 production  protein-containing complex  negative regulation of T cell proliferation  negative regulation of macrophage activation  negative regulation of complement activation, alternative pathway  negative regulation of complement activation, alternative pathway  
NDEx NetworkVSIG4
Atlas of Cancer Signalling NetworkVSIG4
Wikipedia pathwaysVSIG4
Orthology - Evolution
OrthoDB11326
GeneTree (enSembl)ENSG00000155659
Phylogenetic Trees/Animal Genes : TreeFamVSIG4
Homologs : HomoloGeneVSIG4
Homology/Alignments : Family Browser (UCSC)VSIG4
Gene fusions - Rearrangements
Fusion : QuiverVSIG4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG4
dbVarVSIG4
ClinVarVSIG4
MonarchVSIG4
1000_GenomesVSIG4 
Exome Variant ServerVSIG4
GNOMAD BrowserENSG00000155659
Varsome BrowserVSIG4
ACMGVSIG4 variants
VarityQ9Y279
Genomic Variants (DGV)VSIG4 [DGVbeta]
DECIPHERVSIG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIG4 
Mutations
ICGC Data PortalVSIG4 
TCGA Data PortalVSIG4 
Broad Tumor PortalVSIG4
OASIS PortalVSIG4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSIG4
Mutations and Diseases : HGMDVSIG4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVSIG4
DgiDB (Drug Gene Interaction Database)VSIG4
DoCM (Curated mutations)VSIG4
CIViC (Clinical Interpretations of Variants in Cancer)VSIG4
Cancer3DVSIG4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300353   
Orphanet
DisGeNETVSIG4
MedgenVSIG4
Genetic Testing Registry VSIG4
NextProtQ9Y279 [Medical]
GENETestsVSIG4
Target ValidationVSIG4
Huge Navigator VSIG4 [HugePedia]
ClinGenVSIG4
Clinical trials, drugs, therapy
MyCancerGenomeVSIG4
Protein Interactions : CTDVSIG4
Pharm GKB GenePA134986421
PharosQ9Y279
Clinical trialVSIG4
Miscellaneous
canSAR (ICR)VSIG4
HarmonizomeVSIG4
DataMed IndexVSIG4
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVSIG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:08 CEST 2021

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