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VSIG8 (V-set and immunoglobulin domain containing 8)

Identity

Other alias-
HGNC (Hugo) VSIG8
LocusID (NCBI) 391123
Atlas_Id 75647
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159824106 and ends at 159832447 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSIG8   32063
Cards
Entrez_Gene (NCBI)VSIG8  391123  V-set and immunoglobulin domain containing 8
Aliases
GeneCards (Weizmann)VSIG8
Ensembl hg19 (Hinxton)ENSG00000243284 [Gene_View]  chr1:159824106-159832447 [Contig_View]  VSIG8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243284 [Gene_View]  chr1:159824106-159832447 [Contig_View]  VSIG8 [Vega]
ICGC DataPortalENSG00000243284
TCGA cBioPortalVSIG8
AceView (NCBI)VSIG8
Genatlas (Paris)VSIG8
WikiGenes391123
SOURCE (Princeton)VSIG8
Genetics Home Reference (NIH)VSIG8
Genomic and cartography
GoldenPath hg19 (UCSC)VSIG8  -     chr1:159824106-159832447 -  1q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VSIG8  -     1q23.2   [Description]    (hg38-Dec_2013)
EnsemblVSIG8 - 1q23.2 [CytoView hg19]  VSIG8 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIVSIG8 [Mapview hg19]  VSIG8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC132893 BC132895 HQ258612
RefSeq transcript (Entrez)NM_001013661
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)VSIG8
Cluster EST : UnigeneHs.647718 [ NCBI ]
CGAP (NCI)Hs.647718
Alternative Splicing GalleryENSG00000243284
Gene ExpressionVSIG8 [ NCBI-GEO ]   VSIG8 [ EBI - ARRAY_EXPRESS ]   VSIG8 [ SEEK ]   VSIG8 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391123
GTEX Portal (Tissue expression)VSIG8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VU13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VU13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VU13
Splice isoforms : SwissVarQ5VU13
PhosPhoSitePlusQ5VU13
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)VSIG8
DMDM Disease mutations391123
Blocks (Seattle)VSIG8
SuperfamilyQ5VU13
Human Protein AtlasENSG00000243284
Peptide AtlasQ5VU13
HPRD18404
Protein Interaction databases
DIP (DOE-UCLA)Q5VU13
IntAct (EBI)Q5VU13
FunCoupENSG00000243284
BioGRIDVSIG8
STRING (EMBL)VSIG8
ZODIACVSIG8
Ontologies - Pathways
QuickGOQ5VU13
Ontology : AmiGOintracellular  integral component of membrane  poly(A) RNA binding  
Ontology : EGO-EBIintracellular  integral component of membrane  poly(A) RNA binding  
NDEx NetworkVSIG8
Atlas of Cancer Signalling NetworkVSIG8
Wikipedia pathwaysVSIG8
Orthology - Evolution
OrthoDB391123
GeneTree (enSembl)ENSG00000243284
Phylogenetic Trees/Animal Genes : TreeFamVSIG8
HOVERGENQ5VU13
HOGENOMQ5VU13
Homologs : HomoloGeneVSIG8
Homology/Alignments : Family Browser (UCSC)VSIG8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG8
dbVarVSIG8
ClinVarVSIG8
1000_GenomesVSIG8 
Exome Variant ServerVSIG8
ExAC (Exome Aggregation Consortium)VSIG8 (select the gene name)
Genetic variants : HAPMAP391123
Genomic Variants (DGV)VSIG8 [DGVbeta]
DECIPHER (Syndromes)1:159824106-159832447  ENSG00000243284
CONAN: Copy Number AnalysisVSIG8 
Mutations
ICGC Data PortalVSIG8 
TCGA Data PortalVSIG8 
Broad Tumor PortalVSIG8
OASIS PortalVSIG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSIG8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSIG8
DgiDB (Drug Gene Interaction Database)VSIG8
DoCM (Curated mutations)VSIG8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG8 (select a term)
intoGenVSIG8
Cancer3DVSIG8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSIG8
Genetic Testing Registry VSIG8
NextProtQ5VU13 [Medical]
TSGene391123
GENETestsVSIG8
Huge Navigator VSIG8 [HugePedia]
snp3D : Map Gene to Disease391123
BioCentury BCIQVSIG8
ClinGenVSIG8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391123
Chemical/Pharm GKB GenePA142670610
Clinical trialVSIG8
Miscellaneous
canSAR (ICR)VSIG8 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG8
EVEXVSIG8
GoPubMedVSIG8
iHOPVSIG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:21 CET 2017

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