Atlas of Genetics and Cytogenetics in Oncology and Haematology

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VSIR (V-set immunoregulatory receptor)

Identity

Alias (NCBI)B7-H5
B7H5
C10orf54
DD1alpha
Dies1
GI24
PD-1H
PP2135
SISP1
VISTA
HGNC (Hugo) VSIR
HGNC Alias symbSISP1
GI24
B7-H5
B7H5
VISTA
PD-1H
Dies1
HGNC Alias namestress induced secreted protein 1
 V-domain Ig suppressor of T cell activation
 PDCD1 homolog
HGNC Previous nameC10orf54
HGNC Previous namechromosome 10 open reading frame 54
LocusID (NCBI) 64115
Atlas_Id 56664
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71747556 and ends at 71773520 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VSIR   30085
Cards
Entrez_Gene (NCBI)VSIR    V-set immunoregulatory receptor
AliasesB7-H5; B7H5; C10orf54; DD1alpha; 
Dies1; GI24; PD-1H; PP2135; SISP1; VISTA
GeneCards (Weizmann)VSIR
Ensembl hg19 (Hinxton)ENSG00000107738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107738 [Gene_View]  ENSG00000107738 [Sequence]  chr10:71747556-71773520 [Contig_View]  VSIR [Vega]
ICGC DataPortalENSG00000107738
TCGA cBioPortalVSIR
AceView (NCBI)VSIR
Genatlas (Paris)VSIR
SOURCE (Princeton)VSIR
Genetics Home Reference (NIH)VSIR
Genomic and cartography
GoldenPath hg38 (UCSC)VSIR  -     chr10:71747556-71773520 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIR  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathVSIR - 10q22.1 [CytoView hg19]  VSIR - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000107738
genome Data Viewer NCBIVSIR [Mapview hg19]  
OMIM615608   
Gene and transcription
Genbank (Entrez)AB073653 AF193048 AF289594 AK024449 AY265805
RefSeq transcript (Entrez)NM_022153
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSIR
Alternative Splicing GalleryENSG00000107738
Gene ExpressionVSIR [ NCBI-GEO ]   VSIR [ EBI - ARRAY_EXPRESS ]   VSIR [ SEEK ]   VSIR [ MEM ]
Gene Expression Viewer (FireBrowse)VSIR [ Firebrowse - Broad ]
GenevisibleExpression of VSIR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64115
GTEX Portal (Tissue expression)VSIR
Human Protein AtlasENSG00000107738-VSIR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7M9
Splice isoforms : SwissVarQ9H7M9
PhosPhoSitePlusQ9H7M9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set    VISTA   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSIR
Blocks (Seattle)VSIR
PDB (RSDB)6MVL    6OIL    6U6V   
PDB Europe6MVL    6OIL    6U6V   
PDB (PDBSum)6MVL    6OIL    6U6V   
PDB (IMB)6MVL    6OIL    6U6V   
Structural Biology KnowledgeBase6MVL    6OIL    6U6V   
SCOP (Structural Classification of Proteins)6MVL    6OIL    6U6V   
CATH (Classification of proteins structures)6MVL    6OIL    6U6V   
SuperfamilyQ9H7M9
Human Protein Atlas [tissue]ENSG00000107738-VSIR [tissue]
Peptide AtlasQ9H7M9
IPIIPI00303333   IPI00872022   IPI00103702   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7M9
IntAct (EBI)Q9H7M9
BioGRIDVSIR
STRING (EMBL)VSIR
ZODIACVSIR
Ontologies - Pathways
QuickGOQ9H7M9
Ontology : AmiGOplasma membrane  positive regulation of gene expression  positive regulation of endopeptidase activity  integral component of membrane  enzyme binding  positive regulation of cell migration  zymogen activation  negative regulation of interferon-gamma production  negative regulation of interleukin-10 production  negative regulation of interleukin-17 production  negative regulation of tumor necrosis factor production  identical protein binding  positive regulation of regulatory T cell differentiation  regulation of immune response  endopeptidase activator activity  positive regulation of collagen catabolic process  negative regulation of CD4-positive, alpha-beta T cell proliferation  negative regulation of CD8-positive, alpha-beta T cell proliferation  
Ontology : EGO-EBIplasma membrane  positive regulation of gene expression  positive regulation of endopeptidase activity  integral component of membrane  enzyme binding  positive regulation of cell migration  zymogen activation  negative regulation of interferon-gamma production  negative regulation of interleukin-10 production  negative regulation of interleukin-17 production  negative regulation of tumor necrosis factor production  identical protein binding  positive regulation of regulatory T cell differentiation  regulation of immune response  endopeptidase activator activity  positive regulation of collagen catabolic process  negative regulation of CD4-positive, alpha-beta T cell proliferation  negative regulation of CD8-positive, alpha-beta T cell proliferation  
NDEx NetworkVSIR
Atlas of Cancer Signalling NetworkVSIR
Wikipedia pathwaysVSIR
Orthology - Evolution
OrthoDB64115
GeneTree (enSembl)ENSG00000107738
Phylogenetic Trees/Animal Genes : TreeFamVSIR
HOGENOMQ9H7M9
Homologs : HomoloGeneVSIR
Homology/Alignments : Family Browser (UCSC)VSIR
Gene fusions - Rearrangements
Fusion : QuiverVSIR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIR [hg38]
dbVarVSIR
ClinVarVSIR
MonarchVSIR
1000_GenomesVSIR 
Exome Variant ServerVSIR
GNOMAD BrowserENSG00000107738
Varsome BrowserVSIR
Genomic Variants (DGV)VSIR [DGVbeta]
DECIPHERVSIR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIR 
Mutations
ICGC Data PortalVSIR 
TCGA Data PortalVSIR 
Broad Tumor PortalVSIR
OASIS PortalVSIR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSIR
Mutations and Diseases : HGMDVSIR
BioMutasearch VSIR
DgiDB (Drug Gene Interaction Database)VSIR
DoCM (Curated mutations)VSIR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIR (select a term)
intoGenVSIR
Cancer3DVSIR(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615608   
Orphanet
DisGeNETVSIR
MedgenVSIR
Genetic Testing Registry VSIR
NextProtQ9H7M9 [Medical]
GENETestsVSIR
Target ValidationVSIR
Huge Navigator VSIR [HugePedia]
ClinGenVSIR
Clinical trials, drugs, therapy
MyCancerGenomeVSIR
Protein Interactions : CTD
Pharm GKB GenePA142672307
PharosQ9H7M9
Clinical trialVSIR
Miscellaneous
canSAR (ICR)VSIR (select the gene name)
HarmonizomeVSIR
DataMed IndexVSIR
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVSIR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:44:11 CET 2021
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