Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VSNL1 (visinin like 1)

Identity

Alias (NCBI)HLP3
HPCAL3
HUVISL1
VILIP
VILIP-1
HGNC (Hugo) VSNL1
HGNC Alias symbVILIP
HPCAL3
HUVISL1
HLP3
VILIP-1
HGNC Alias namehippocalcin-like protein 3
LocusID (NCBI) 7447
Atlas_Id 49925
Location 2p24.2  [Link to chromosome band 2p24]
Location_base_pair Starts at 17540696 and ends at 17657018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTBD9 (6p21.2)::VSNL1 (2p24.2)PLEKHH2 (2p21)::VSNL1 (2p24.2)THUMPD2 (2p22.1)::VSNL1 (2p24.2)
VSNL1 (2p24.2)::BTBD9 (6p21.2)PLEKHH2 2p21::VSNL1 2p24.2THUMPD2 2p22.1::VSNL1 2p24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)VSNL1   12722
Cards
Entrez_Gene (NCBI)VSNL1    visinin like 1
AliasesHLP3; HPCAL3; HUVISL1; VILIP; 
VILIP-1
GeneCards (Weizmann)VSNL1
Ensembl hg19 (Hinxton)ENSG00000163032 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163032 [Gene_View]  ENSG00000163032 [Sequence]  chr2:17540696-17657018 [Contig_View]  VSNL1 [Vega]
ICGC DataPortalENSG00000163032
TCGA cBioPortalVSNL1
AceView (NCBI)VSNL1
Genatlas (Paris)VSNL1
SOURCE (Princeton)VSNL1
Genetics Home Reference (NIH)VSNL1
Genomic and cartography
GoldenPath hg38 (UCSC)VSNL1  -     chr2:17540696-17657018 +  2p24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSNL1  -     2p24.2   [Description]    (hg19-Feb_2009)
GoldenPathVSNL1 - 2p24.2 [CytoView hg19]  VSNL1 - 2p24.2 [CytoView hg38]
ImmunoBaseENSG00000163032
Genome Data Viewer NCBIVSNL1 [Mapview hg19]  
OMIM600817   
Gene and transcription
Genbank (Entrez)AB001104 AF039555 AI143139 AK308816 BC022012
RefSeq transcript (Entrez)NM_001366803 NM_001366804 NM_001366805 NM_001366806 NM_003385
Consensus coding sequences : CCDS (NCBI)VSNL1
Gene ExpressionVSNL1 [ NCBI-GEO ]   VSNL1 [ EBI - ARRAY_EXPRESS ]   VSNL1 [ SEEK ]   VSNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)VSNL1 [ Firebrowse - Broad ]
GenevisibleExpression of VSNL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7447
GTEX Portal (Tissue expression)VSNL1
Human Protein AtlasENSG00000163032-VSNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62760   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62760  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62760
PhosPhoSitePlusP62760
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Recoverin    VILIP-1   
Domain families : Pfam (Sanger)EF-hand_1 (PF00036)    EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam00036    pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)VSNL1
SuperfamilyP62760
AlphaFold pdb e-kbP62760   
Human Protein Atlas [tissue]ENSG00000163032-VSNL1 [tissue]
HPRD02890
Protein Interaction databases
DIP (DOE-UCLA)P62760
IntAct (EBI)P62760
BioGRIDVSNL1
STRING (EMBL)VSNL1
ZODIACVSNL1
Ontologies - Pathways
QuickGOP62760
Ontology : AmiGOcalcium ion binding  calcium ion binding  protein binding  cytosol  membrane  positive regulation of insulin secretion involved in cellular response to glucose stimulus  positive regulation of exocytosis  negative regulation of insulin secretion  
Ontology : EGO-EBIcalcium ion binding  calcium ion binding  protein binding  cytosol  membrane  positive regulation of insulin secretion involved in cellular response to glucose stimulus  positive regulation of exocytosis  negative regulation of insulin secretion  
NDEx NetworkVSNL1
Atlas of Cancer Signalling NetworkVSNL1
Wikipedia pathwaysVSNL1
Orthology - Evolution
OrthoDB7447
GeneTree (enSembl)ENSG00000163032
Phylogenetic Trees/Animal Genes : TreeFamVSNL1
Homologs : HomoloGeneVSNL1
Homology/Alignments : Family Browser (UCSC)VSNL1
Gene fusions - Rearrangements
Fusion : MitelmanPLEKHH2::VSNL1 [2p21/2p24.2]  
Fusion : MitelmanTHUMPD2::VSNL1 [2p22.1/2p24.2]  
Fusion : QuiverVSNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSNL1
dbVarVSNL1
ClinVarVSNL1
MonarchVSNL1
1000_GenomesVSNL1 
Exome Variant ServerVSNL1
GNOMAD BrowserENSG00000163032
Varsome BrowserVSNL1
ACMGVSNL1 variants
VarityP62760
Genomic Variants (DGV)VSNL1 [DGVbeta]
DECIPHERVSNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSNL1 
Mutations
ICGC Data PortalVSNL1 
TCGA Data PortalVSNL1 
Broad Tumor PortalVSNL1
OASIS PortalVSNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSNL1
Mutations and Diseases : HGMDVSNL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVSNL1
DgiDB (Drug Gene Interaction Database)VSNL1
DoCM (Curated mutations)VSNL1
CIViC (Clinical Interpretations of Variants in Cancer)VSNL1
Cancer3DVSNL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600817   
Orphanet
DisGeNETVSNL1
MedgenVSNL1
Genetic Testing Registry VSNL1
NextProtP62760 [Medical]
GENETestsVSNL1
Target ValidationVSNL1
Huge Navigator VSNL1 [HugePedia]
ClinGenVSNL1
Clinical trials, drugs, therapy
MyCancerGenomeVSNL1
Protein Interactions : CTDVSNL1
Pharm GKB GenePA37333
PharosP62760
Clinical trialVSNL1
Miscellaneous
canSAR (ICR)VSNL1
HarmonizomeVSNL1
ARCHS4VSNL1
DataMed IndexVSNL1
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVSNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 13:06:18 CET 2022
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.