Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VSTM1 (V-set and transmembrane domain containing 1)

Identity

Alias_symbol (synonym)UNQ3033
Other aliasSIRL-1
SIRL1
HGNC (Hugo) VSTM1
LocusID (NCBI) 284415
Atlas_Id 55608
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54040826 and ends at 54063953 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSTM1   29455
Cards
Entrez_Gene (NCBI)VSTM1  284415  V-set and transmembrane domain containing 1
AliasesSIRL-1; SIRL1; UNQ3033
GeneCards (Weizmann)VSTM1
Ensembl hg19 (Hinxton)ENSG00000189068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189068 [Gene_View]  chr19:54040826-54063953 [Contig_View]  VSTM1 [Vega]
ICGC DataPortalENSG00000189068
TCGA cBioPortalVSTM1
AceView (NCBI)VSTM1
Genatlas (Paris)VSTM1
WikiGenes284415
SOURCE (Princeton)VSTM1
Genetics Home Reference (NIH)VSTM1
Genomic and cartography
GoldenPath hg38 (UCSC)VSTM1  -     chr19:54040826-54063953 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSTM1  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblVSTM1 - 19q13.42 [CytoView hg19]  VSTM1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIVSTM1 [Mapview hg19]  VSTM1 [Mapview hg38]
OMIM616804   
Gene and transcription
Genbank (Entrez)AI457604 AY358542 BC100942 BC100943 BG189223
RefSeq transcript (Entrez)NM_001288791 NM_001288792 NM_001288793 NM_198481
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187693 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061
Consensus coding sequences : CCDS (NCBI)VSTM1
Cluster EST : UnigeneHs.444431 [ NCBI ]
CGAP (NCI)Hs.444431
Alternative Splicing GalleryENSG00000189068
Gene ExpressionVSTM1 [ NCBI-GEO ]   VSTM1 [ EBI - ARRAY_EXPRESS ]   VSTM1 [ SEEK ]   VSTM1 [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284415
GTEX Portal (Tissue expression)VSTM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX27
Splice isoforms : SwissVarQ6UX27
PhosPhoSitePlusQ6UX27
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)Ig_2 (PF13895)   
Domain families : Pfam (NCBI)pfam13895   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM1
DMDM Disease mutations284415
Blocks (Seattle)VSTM1
SuperfamilyQ6UX27
Human Protein AtlasENSG00000189068
Peptide AtlasQ6UX27
HPRD15615
IPIIPI00394824   IPI00642563   IPI00827993   IPI00796970   IPI00954899   IPI00955020   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX27
IntAct (EBI)Q6UX27
FunCoupENSG00000189068
BioGRIDVSTM1
STRING (EMBL)VSTM1
ZODIACVSTM1
Ontologies - Pathways
QuickGOQ6UX27
Ontology : AmiGOimmune system process  cytokine activity  extracellular space  integral component of membrane  
Ontology : EGO-EBIimmune system process  cytokine activity  extracellular space  integral component of membrane  
NDEx NetworkVSTM1
Atlas of Cancer Signalling NetworkVSTM1
Wikipedia pathwaysVSTM1
Orthology - Evolution
OrthoDB284415
GeneTree (enSembl)ENSG00000189068
Phylogenetic Trees/Animal Genes : TreeFamVSTM1
HOVERGENQ6UX27
HOGENOMQ6UX27
Homologs : HomoloGeneVSTM1
Homology/Alignments : Family Browser (UCSC)VSTM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM1
dbVarVSTM1
ClinVarVSTM1
1000_GenomesVSTM1 
Exome Variant ServerVSTM1
ExAC (Exome Aggregation Consortium)VSTM1 (select the gene name)
Genetic variants : HAPMAP284415
Genomic Variants (DGV)VSTM1 [DGVbeta]
DECIPHERVSTM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSTM1 
Mutations
ICGC Data PortalVSTM1 
TCGA Data PortalVSTM1 
Broad Tumor PortalVSTM1
OASIS PortalVSTM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSTM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM1
DgiDB (Drug Gene Interaction Database)VSTM1
DoCM (Curated mutations)VSTM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM1 (select a term)
intoGenVSTM1
Cancer3DVSTM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616804   
Orphanet
MedgenVSTM1
Genetic Testing Registry VSTM1
NextProtQ6UX27 [Medical]
TSGene284415
GENETestsVSTM1
Target ValidationVSTM1
Huge Navigator VSTM1 [HugePedia]
snp3D : Map Gene to Disease284415
BioCentury BCIQVSTM1
ClinGenVSTM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284415
Chemical/Pharm GKB GenePA147357166
Clinical trialVSTM1
Miscellaneous
canSAR (ICR)VSTM1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM1
EVEXVSTM1
GoPubMedVSTM1
iHOPVSTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:02:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.