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VSTM2A (V-set and transmembrane domain containing 2A)

Identity

Alias_namesVSTM2
V-set and transmembrane domain containing 2
Alias_symbol (synonym)MGC33530
Other alias
HGNC (Hugo) VSTM2A
LocusID (NCBI) 222008
Atlas_Id 75649
Location 7p11.2  [Link to chromosome band 7p11]
Location_base_pair Starts at 54610018 and ends at 54638773 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CABIN1 (22q11.23) / VSTM2A (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSTM2A   28499
Cards
Entrez_Gene (NCBI)VSTM2A  222008  V-set and transmembrane domain containing 2A
AliasesVSTM2
GeneCards (Weizmann)VSTM2A
Ensembl hg19 (Hinxton)ENSG00000170419 [Gene_View]  chr7:54610018-54638773 [Contig_View]  VSTM2A [Vega]
Ensembl hg38 (Hinxton)ENSG00000170419 [Gene_View]  chr7:54610018-54638773 [Contig_View]  VSTM2A [Vega]
ICGC DataPortalENSG00000170419
TCGA cBioPortalVSTM2A
AceView (NCBI)VSTM2A
Genatlas (Paris)VSTM2A
WikiGenes222008
SOURCE (Princeton)VSTM2A
Genetics Home Reference (NIH)VSTM2A
Genomic and cartography
GoldenPath hg19 (UCSC)VSTM2A  -     chr7:54610018-54638773 +  7p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VSTM2A  -     7p11.2   [Description]    (hg38-Dec_2013)
EnsemblVSTM2A - 7p11.2 [CytoView hg19]  VSTM2A - 7p11.2 [CytoView hg38]
Mapping of homologs : NCBIVSTM2A [Mapview hg19]  VSTM2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB074160 BC028404 BC045679 BI458531 BI752069
RefSeq transcript (Entrez)NM_001301009 NM_182546
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929330
Consensus coding sequences : CCDS (NCBI)VSTM2A
Cluster EST : UnigeneHs.731937 [ NCBI ]
CGAP (NCI)Hs.731937
Alternative Splicing GalleryENSG00000170419
Gene ExpressionVSTM2A [ NCBI-GEO ]   VSTM2A [ EBI - ARRAY_EXPRESS ]   VSTM2A [ SEEK ]   VSTM2A [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222008
GTEX Portal (Tissue expression)VSTM2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAG5
Splice isoforms : SwissVarQ8TAG5
PhosPhoSitePlusQ8TAG5
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM2A
DMDM Disease mutations222008
Blocks (Seattle)VSTM2A
SuperfamilyQ8TAG5
Human Protein AtlasENSG00000170419
Peptide AtlasQ8TAG5
HPRD14566
IPIIPI00879625   IPI00789234   IPI00847947   IPI00879794   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAG5
IntAct (EBI)Q8TAG5
FunCoupENSG00000170419
BioGRIDVSTM2A
STRING (EMBL)VSTM2A
ZODIACVSTM2A
Ontologies - Pathways
QuickGOQ8TAG5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkVSTM2A
Atlas of Cancer Signalling NetworkVSTM2A
Wikipedia pathwaysVSTM2A
Orthology - Evolution
OrthoDB222008
GeneTree (enSembl)ENSG00000170419
Phylogenetic Trees/Animal Genes : TreeFamVSTM2A
HOVERGENQ8TAG5
HOGENOMQ8TAG5
Homologs : HomoloGeneVSTM2A
Homology/Alignments : Family Browser (UCSC)VSTM2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM2A
dbVarVSTM2A
ClinVarVSTM2A
1000_GenomesVSTM2A 
Exome Variant ServerVSTM2A
ExAC (Exome Aggregation Consortium)VSTM2A (select the gene name)
Genetic variants : HAPMAP222008
Genomic Variants (DGV)VSTM2A [DGVbeta]
DECIPHER (Syndromes)7:54610018-54638773  ENSG00000170419
CONAN: Copy Number AnalysisVSTM2A 
Mutations
ICGC Data PortalVSTM2A 
TCGA Data PortalVSTM2A 
Broad Tumor PortalVSTM2A
OASIS PortalVSTM2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSTM2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM2A
DgiDB (Drug Gene Interaction Database)VSTM2A
DoCM (Curated mutations)VSTM2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM2A (select a term)
intoGenVSTM2A
Cancer3DVSTM2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSTM2A
Genetic Testing Registry VSTM2A
NextProtQ8TAG5 [Medical]
TSGene222008
GENETestsVSTM2A
Huge Navigator VSTM2A [HugePedia]
snp3D : Map Gene to Disease222008
BioCentury BCIQVSTM2A
ClinGenVSTM2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222008
Chemical/Pharm GKB GenePA162408875
Clinical trialVSTM2A
Miscellaneous
canSAR (ICR)VSTM2A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM2A
EVEXVSTM2A
GoPubMedVSTM2A
iHOPVSTM2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:21 CET 2017

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