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VSTM2L (V-set and transmembrane domain containing 2 like)

Identity

Alias (NCBI)C20orf102
dJ1118M15.2
HGNC (Hugo) VSTM2L
HGNC Alias symbdJ1118M15.2
HGNC Previous nameC20orf102
HGNC Previous namechromosome 20 open reading frame 102
LocusID (NCBI) 128434
Atlas_Id 75652
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 37903097 and ends at 37945345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VSTM2L (20q11.23) / CTNNBL1 (20q11.23)VSTM2L (20q11.23) / ZBTB5 (9p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VSTM2L   16096
Cards
Entrez_Gene (NCBI)VSTM2L    V-set and transmembrane domain containing 2 like
AliasesC20orf102; dJ1118M15.2
GeneCards (Weizmann)VSTM2L
Ensembl hg19 (Hinxton)ENSG00000132821 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132821 [Gene_View]  ENSG00000132821 [Sequence]  chr20:37903097-37945345 [Contig_View]  VSTM2L [Vega]
ICGC DataPortalENSG00000132821
TCGA cBioPortalVSTM2L
AceView (NCBI)VSTM2L
Genatlas (Paris)VSTM2L
SOURCE (Princeton)VSTM2L
Genetics Home Reference (NIH)VSTM2L
Genomic and cartography
GoldenPath hg38 (UCSC)VSTM2L  -     chr20:37903097-37945345 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSTM2L  -     20q11.23   [Description]    (hg19-Feb_2009)
GoldenPathVSTM2L - 20q11.23 [CytoView hg19]  VSTM2L - 20q11.23 [CytoView hg38]
ImmunoBaseENSG00000132821
genome Data Viewer NCBIVSTM2L [Mapview hg19]  
OMIM616537   
Gene and transcription
Genbank (Entrez)AK056177 AL834410 BC033818 BE905791
RefSeq transcript (Entrez)NM_080607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSTM2L
Alternative Splicing GalleryENSG00000132821
Gene ExpressionVSTM2L [ NCBI-GEO ]   VSTM2L [ EBI - ARRAY_EXPRESS ]   VSTM2L [ SEEK ]   VSTM2L [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM2L [ Firebrowse - Broad ]
GenevisibleExpression of VSTM2L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128434
GTEX Portal (Tissue expression)VSTM2L
Human Protein AtlasENSG00000132821-VSTM2L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N03
Splice isoforms : SwissVarQ96N03
PhosPhoSitePlusQ96N03
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set    VSTM2L   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM2L
Blocks (Seattle)VSTM2L
SuperfamilyQ96N03
Human Protein Atlas [tissue]ENSG00000132821-VSTM2L [tissue]
Peptide AtlasQ96N03
HPRD12735
IPIIPI00028685   IPI00553123   IPI00555977   
Protein Interaction databases
DIP (DOE-UCLA)Q96N03
IntAct (EBI)Q96N03
BioGRIDVSTM2L
STRING (EMBL)VSTM2L
ZODIACVSTM2L
Ontologies - Pathways
QuickGOQ96N03
Ontology : AmiGOprotein binding  extracellular region  cytoplasm  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  axon guidance  axon  negative regulation of neuron apoptotic process  dendrite self-avoidance  cell-cell adhesion mediator activity  
Ontology : EGO-EBIprotein binding  extracellular region  cytoplasm  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  axon guidance  axon  negative regulation of neuron apoptotic process  dendrite self-avoidance  cell-cell adhesion mediator activity  
NDEx NetworkVSTM2L
Atlas of Cancer Signalling NetworkVSTM2L
Wikipedia pathwaysVSTM2L
Orthology - Evolution
OrthoDB128434
GeneTree (enSembl)ENSG00000132821
Phylogenetic Trees/Animal Genes : TreeFamVSTM2L
HOGENOMQ96N03
Homologs : HomoloGeneVSTM2L
Homology/Alignments : Family Browser (UCSC)VSTM2L
Gene fusions - Rearrangements
Fusion : QuiverVSTM2L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM2L [hg38]
dbVarVSTM2L
ClinVarVSTM2L
MonarchVSTM2L
1000_GenomesVSTM2L 
Exome Variant ServerVSTM2L
GNOMAD BrowserENSG00000132821
Varsome BrowserVSTM2L
Genomic Variants (DGV)VSTM2L [DGVbeta]
DECIPHERVSTM2L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSTM2L 
Mutations
ICGC Data PortalVSTM2L 
TCGA Data PortalVSTM2L 
Broad Tumor PortalVSTM2L
OASIS PortalVSTM2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM2L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSTM2L
Mutations and Diseases : HGMDVSTM2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM2L
DgiDB (Drug Gene Interaction Database)VSTM2L
DoCM (Curated mutations)VSTM2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM2L (select a term)
intoGenVSTM2L
Cancer3DVSTM2L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616537   
Orphanet
DisGeNETVSTM2L
MedgenVSTM2L
Genetic Testing Registry VSTM2L
NextProtQ96N03 [Medical]
GENETestsVSTM2L
Target ValidationVSTM2L
Huge Navigator VSTM2L [HugePedia]
ClinGenVSTM2L
Clinical trials, drugs, therapy
MyCancerGenomeVSTM2L
Protein Interactions : CTD
Pharm GKB GenePA162408904
Clinical trialVSTM2L
Miscellaneous
canSAR (ICR)VSTM2L (select the gene name)
HarmonizomeVSTM2L
DataMed IndexVSTM2L
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM2L
EVEXVSTM2L
GoPubMedVSTM2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:34:35 CET 2020
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