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VSTM2L (V-set and transmembrane domain containing 2 like)

Identity

Alias_namesC20orf102
chromosome 20 open reading frame 102
Alias_symbol (synonym)dJ1118M15.2
Other alias
HGNC (Hugo) VSTM2L
LocusID (NCBI) 128434
Atlas_Id 75652
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 36531499 and ends at 36573747 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VSTM2L (20q11.23) / CTNNBL1 (20q11.23)VSTM2L (20q11.23) / ZBTB5 (9p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSTM2L   16096
Cards
Entrez_Gene (NCBI)VSTM2L  128434  V-set and transmembrane domain containing 2 like
AliasesC20orf102; dJ1118M15.2
GeneCards (Weizmann)VSTM2L
Ensembl hg19 (Hinxton)ENSG00000132821 [Gene_View]  chr20:36531499-36573747 [Contig_View]  VSTM2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000132821 [Gene_View]  chr20:36531499-36573747 [Contig_View]  VSTM2L [Vega]
ICGC DataPortalENSG00000132821
TCGA cBioPortalVSTM2L
AceView (NCBI)VSTM2L
Genatlas (Paris)VSTM2L
WikiGenes128434
SOURCE (Princeton)VSTM2L
Genetics Home Reference (NIH)VSTM2L
Genomic and cartography
GoldenPath hg19 (UCSC)VSTM2L  -     chr20:36531499-36573747 +  20q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VSTM2L  -     20q11.23   [Description]    (hg38-Dec_2013)
EnsemblVSTM2L - 20q11.23 [CytoView hg19]  VSTM2L - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIVSTM2L [Mapview hg19]  VSTM2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056177 AL834410 BC033818 BE905791 JF432582
RefSeq transcript (Entrez)NM_080607
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)VSTM2L
Cluster EST : UnigeneHs.517029 [ NCBI ]
CGAP (NCI)Hs.517029
Alternative Splicing GalleryENSG00000132821
Gene ExpressionVSTM2L [ NCBI-GEO ]   VSTM2L [ EBI - ARRAY_EXPRESS ]   VSTM2L [ SEEK ]   VSTM2L [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128434
GTEX Portal (Tissue expression)VSTM2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N03
Splice isoforms : SwissVarQ96N03
PhosPhoSitePlusQ96N03
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    VSTM2L   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM2L
DMDM Disease mutations128434
Blocks (Seattle)VSTM2L
SuperfamilyQ96N03
Human Protein AtlasENSG00000132821
Peptide AtlasQ96N03
HPRD12735
IPIIPI00028685   IPI00553123   IPI00555977   
Protein Interaction databases
DIP (DOE-UCLA)Q96N03
IntAct (EBI)Q96N03
FunCoupENSG00000132821
BioGRIDVSTM2L
STRING (EMBL)VSTM2L
ZODIACVSTM2L
Ontologies - Pathways
QuickGOQ96N03
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkVSTM2L
Atlas of Cancer Signalling NetworkVSTM2L
Wikipedia pathwaysVSTM2L
Orthology - Evolution
OrthoDB128434
GeneTree (enSembl)ENSG00000132821
Phylogenetic Trees/Animal Genes : TreeFamVSTM2L
HOVERGENQ96N03
HOGENOMQ96N03
Homologs : HomoloGeneVSTM2L
Homology/Alignments : Family Browser (UCSC)VSTM2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM2L
dbVarVSTM2L
ClinVarVSTM2L
1000_GenomesVSTM2L 
Exome Variant ServerVSTM2L
ExAC (Exome Aggregation Consortium)VSTM2L (select the gene name)
Genetic variants : HAPMAP128434
Genomic Variants (DGV)VSTM2L [DGVbeta]
DECIPHER (Syndromes)20:36531499-36573747  ENSG00000132821
CONAN: Copy Number AnalysisVSTM2L 
Mutations
ICGC Data PortalVSTM2L 
TCGA Data PortalVSTM2L 
Broad Tumor PortalVSTM2L
OASIS PortalVSTM2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSTM2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM2L
DgiDB (Drug Gene Interaction Database)VSTM2L
DoCM (Curated mutations)VSTM2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM2L (select a term)
intoGenVSTM2L
Cancer3DVSTM2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSTM2L
Genetic Testing Registry VSTM2L
NextProtQ96N03 [Medical]
TSGene128434
GENETestsVSTM2L
Huge Navigator VSTM2L [HugePedia]
snp3D : Map Gene to Disease128434
BioCentury BCIQVSTM2L
ClinGenVSTM2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128434
Chemical/Pharm GKB GenePA162408904
Clinical trialVSTM2L
Miscellaneous
canSAR (ICR)VSTM2L (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM2L
EVEXVSTM2L
GoPubMedVSTM2L
iHOPVSTM2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:22 CET 2017

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