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VSTM4 (V-set and transmembrane domain containing 4)

Identity

Alias (NCBI)C10orf72
HGNC (Hugo) VSTM4
HGNC Alias symbFLJ31737
HGNC Previous nameC10orf72
HGNC Previous namechromosome 10 open reading frame 72
LocusID (NCBI) 196740
Atlas_Id 75653
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49102172 and ends at 49115522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NFIC (19p13.3) / VSTM4 (10q11.23)NRP1 (10p11.22) / VSTM4 (10q11.23)SGMS1 (10q11.23) / VSTM4 (10q11.23)
TRAPPC9 (8q24.3) / VSTM4 (10q11.23)VSTM4 (10q11.23) / VSTM4 (10q11.23)NRP1 VSTM4
SGMS1 VSTM4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VSTM4   26470
Cards
Entrez_Gene (NCBI)VSTM4    V-set and transmembrane domain containing 4
AliasesC10orf72
GeneCards (Weizmann)VSTM4
Ensembl hg19 (Hinxton)ENSG00000165633 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165633 [Gene_View]  ENSG00000165633 [Sequence]  chr10:49102172-49115522 [Contig_View]  VSTM4 [Vega]
ICGC DataPortalENSG00000165633
TCGA cBioPortalVSTM4
AceView (NCBI)VSTM4
Genatlas (Paris)VSTM4
SOURCE (Princeton)VSTM4
Genetics Home Reference (NIH)VSTM4
Genomic and cartography
GoldenPath hg38 (UCSC)VSTM4  -     chr10:49102172-49115522 -  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSTM4  -     10q11.23   [Description]    (hg19-Feb_2009)
GoldenPathVSTM4 - 10q11.23 [CytoView hg19]  VSTM4 - 10q11.23 [CytoView hg38]
ImmunoBaseENSG00000165633
Genome Data Viewer NCBIVSTM4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001062 AK021993 AK056299 AK297931 AL080114
RefSeq transcript (Entrez)NM_001031746 NM_144984
Consensus coding sequences : CCDS (NCBI)VSTM4
Gene ExpressionVSTM4 [ NCBI-GEO ]   VSTM4 [ EBI - ARRAY_EXPRESS ]   VSTM4 [ SEEK ]   VSTM4 [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM4 [ Firebrowse - Broad ]
GenevisibleExpression of VSTM4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196740
GTEX Portal (Tissue expression)VSTM4
Human Protein AtlasENSG00000165633-VSTM4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW00
PhosPhoSitePlusQ8IW00
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM4
SuperfamilyQ8IW00
AlphaFold pdb e-kbQ8IW00   
Human Protein Atlas [tissue]ENSG00000165633-VSTM4 [tissue]
HPRD08503
Protein Interaction databases
DIP (DOE-UCLA)Q8IW00
IntAct (EBI)Q8IW00
BioGRIDVSTM4
STRING (EMBL)VSTM4
ZODIACVSTM4
Ontologies - Pathways
QuickGOQ8IW00
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  integral component of membrane  
NDEx NetworkVSTM4
Atlas of Cancer Signalling NetworkVSTM4
Wikipedia pathwaysVSTM4
Orthology - Evolution
OrthoDB196740
GeneTree (enSembl)ENSG00000165633
Phylogenetic Trees/Animal Genes : TreeFamVSTM4
Homologs : HomoloGeneVSTM4
Homology/Alignments : Family Browser (UCSC)VSTM4
Gene fusions - Rearrangements
Fusion : QuiverVSTM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM4
dbVarVSTM4
ClinVarVSTM4
MonarchVSTM4
1000_GenomesVSTM4 
Exome Variant ServerVSTM4
GNOMAD BrowserENSG00000165633
Varsome BrowserVSTM4
ACMGVSTM4 variants
VarityQ8IW00
Genomic Variants (DGV)VSTM4 [DGVbeta]
DECIPHERVSTM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSTM4 
Mutations
ICGC Data PortalVSTM4 
TCGA Data PortalVSTM4 
Broad Tumor PortalVSTM4
OASIS PortalVSTM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSTM4
Mutations and Diseases : HGMDVSTM4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVSTM4
DgiDB (Drug Gene Interaction Database)VSTM4
DoCM (Curated mutations)VSTM4
CIViC (Clinical Interpretations of Variants in Cancer)VSTM4
Cancer3DVSTM4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVSTM4
MedgenVSTM4
Genetic Testing Registry VSTM4
NextProtQ8IW00 [Medical]
GENETestsVSTM4
Target ValidationVSTM4
Huge Navigator VSTM4 [HugePedia]
ClinGenVSTM4
Clinical trials, drugs, therapy
MyCancerGenomeVSTM4
Protein Interactions : CTDVSTM4
Pharm GKB GenePA134889917
PharosQ8IW00
Clinical trialVSTM4
Miscellaneous
canSAR (ICR)VSTM4
HarmonizomeVSTM4
DataMed IndexVSTM4
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVSTM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:28:16 CEST 2021

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