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VSTM4 (V-set and transmembrane domain containing 4)

Identity

Alias_namesC10orf72
chromosome 10 open reading frame 72
Alias_symbol (synonym)FLJ31737
Other alias
HGNC (Hugo) VSTM4
LocusID (NCBI) 196740
Atlas_Id 75653
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 49014245 and ends at 49115532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NFIC (19p13.3) / VSTM4 (10q11.23)NRP1 (10p11.22) / VSTM4 (10q11.23)SGMS1 (10q11.23) / VSTM4 (10q11.23)
TRAPPC9 (8q24.3) / VSTM4 (10q11.23)VSTM4 (10q11.23) / VSTM4 (10q11.23)NRP1 VSTM4
SGMS1 VSTM4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSTM4   26470
Cards
Entrez_Gene (NCBI)VSTM4  196740  V-set and transmembrane domain containing 4
AliasesC10orf72
GeneCards (Weizmann)VSTM4
Ensembl hg19 (Hinxton)ENSG00000165633 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165633 [Gene_View]  chr10:49014245-49115532 [Contig_View]  VSTM4 [Vega]
ICGC DataPortalENSG00000165633
TCGA cBioPortalVSTM4
AceView (NCBI)VSTM4
Genatlas (Paris)VSTM4
WikiGenes196740
SOURCE (Princeton)VSTM4
Genetics Home Reference (NIH)VSTM4
Genomic and cartography
GoldenPath hg38 (UCSC)VSTM4  -     chr10:49014245-49115532 -  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSTM4  -     10q11.23   [Description]    (hg19-Feb_2009)
EnsemblVSTM4 - 10q11.23 [CytoView hg19]  VSTM4 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIVSTM4 [Mapview hg19]  VSTM4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001062 AK021993 AK056299 AK297931 AL080114
RefSeq transcript (Entrez)NM_001031746 NM_144984
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSTM4
Cluster EST : UnigeneHs.522928 [ NCBI ]
CGAP (NCI)Hs.522928
Alternative Splicing GalleryENSG00000165633
Gene ExpressionVSTM4 [ NCBI-GEO ]   VSTM4 [ EBI - ARRAY_EXPRESS ]   VSTM4 [ SEEK ]   VSTM4 [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196740
GTEX Portal (Tissue expression)VSTM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IW00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IW00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IW00
Splice isoforms : SwissVarQ8IW00
PhosPhoSitePlusQ8IW00
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Immunoglobulin   
Domain families : Pfam (Sanger)ig (PF00047)   
Domain families : Pfam (NCBI)pfam00047   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM4
DMDM Disease mutations196740
Blocks (Seattle)VSTM4
SuperfamilyQ8IW00
Human Protein AtlasENSG00000165633
Peptide AtlasQ8IW00
HPRD08503
IPIIPI00217085   IPI00043501   
Protein Interaction databases
DIP (DOE-UCLA)Q8IW00
IntAct (EBI)Q8IW00
FunCoupENSG00000165633
BioGRIDVSTM4
STRING (EMBL)VSTM4
ZODIACVSTM4
Ontologies - Pathways
QuickGOQ8IW00
Ontology : AmiGOextracellular region  plasma membrane  integral component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  integral component of membrane  
NDEx NetworkVSTM4
Atlas of Cancer Signalling NetworkVSTM4
Wikipedia pathwaysVSTM4
Orthology - Evolution
OrthoDB196740
GeneTree (enSembl)ENSG00000165633
Phylogenetic Trees/Animal Genes : TreeFamVSTM4
HOVERGENQ8IW00
HOGENOMQ8IW00
Homologs : HomoloGeneVSTM4
Homology/Alignments : Family Browser (UCSC)VSTM4
Gene fusions - Rearrangements
Fusion: TCGANRP1 VSTM4
Fusion: TCGASGMS1 VSTM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM4
dbVarVSTM4
ClinVarVSTM4
1000_GenomesVSTM4 
Exome Variant ServerVSTM4
ExAC (Exome Aggregation Consortium)VSTM4 (select the gene name)
Genetic variants : HAPMAP196740
Genomic Variants (DGV)VSTM4 [DGVbeta]
DECIPHERVSTM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSTM4 
Mutations
ICGC Data PortalVSTM4 
TCGA Data PortalVSTM4 
Broad Tumor PortalVSTM4
OASIS PortalVSTM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSTM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM4
DgiDB (Drug Gene Interaction Database)VSTM4
DoCM (Curated mutations)VSTM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM4 (select a term)
intoGenVSTM4
Cancer3DVSTM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSTM4
Genetic Testing Registry VSTM4
NextProtQ8IW00 [Medical]
TSGene196740
GENETestsVSTM4
Target ValidationVSTM4
Huge Navigator VSTM4 [HugePedia]
snp3D : Map Gene to Disease196740
BioCentury BCIQVSTM4
ClinGenVSTM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196740
Chemical/Pharm GKB GenePA134889917
Clinical trialVSTM4
Miscellaneous
canSAR (ICR)VSTM4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM4
EVEXVSTM4
GoPubMedVSTM4
iHOPVSTM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:48:44 CEST 2017

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