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VSTM5 (V-set and transmembrane domain containing 5)

Identity

Alias_namesC11orf90
chromosome 11 open reading frame 90
Alias_symbol (synonym)LOC387804
Other alias
HGNC (Hugo) VSTM5
LocusID (NCBI) 387804
Atlas_Id 75654
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93553735 and ends at 93583668 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSTM5   34443
Cards
Entrez_Gene (NCBI)VSTM5  387804  V-set and transmembrane domain containing 5
AliasesC11orf90
GeneCards (Weizmann)VSTM5
Ensembl hg19 (Hinxton) [Gene_View]  chr11:93553735-93583668 [Contig_View]  VSTM5 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:93553735-93583668 [Contig_View]  VSTM5 [Vega]
TCGA cBioPortalVSTM5
AceView (NCBI)VSTM5
Genatlas (Paris)VSTM5
WikiGenes387804
SOURCE (Princeton)VSTM5
Genetics Home Reference (NIH)VSTM5
Genomic and cartography
GoldenPath hg19 (UCSC)VSTM5  -     chr11:93553735-93583668 -  11q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VSTM5  -     11q21   [Description]    (hg38-Dec_2013)
EnsemblVSTM5 - 11q21 [CytoView hg19]  VSTM5 - 11q21 [CytoView hg38]
Mapping of homologs : NCBIVSTM5 [Mapview hg19]  VSTM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DY654877 DY655155
RefSeq transcript (Entrez)NM_001144871
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)VSTM5
Cluster EST : UnigeneHs.512252 [ NCBI ]
CGAP (NCI)Hs.512252
Gene ExpressionVSTM5 [ NCBI-GEO ]   VSTM5 [ EBI - ARRAY_EXPRESS ]   VSTM5 [ SEEK ]   VSTM5 [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387804
GTEX Portal (Tissue expression)VSTM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXK1
Splice isoforms : SwissVarA8MXK1
PhosPhoSitePlusA8MXK1
Domains : Interpro (EBI)Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM5
DMDM Disease mutations387804
Blocks (Seattle)VSTM5
SuperfamilyA8MXK1
Peptide AtlasA8MXK1
IPIIPI00921478   IPI00917327   
Protein Interaction databases
DIP (DOE-UCLA)A8MXK1
IntAct (EBI)A8MXK1
BioGRIDVSTM5
STRING (EMBL)VSTM5
ZODIACVSTM5
Ontologies - Pathways
QuickGOA8MXK1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkVSTM5
Atlas of Cancer Signalling NetworkVSTM5
Wikipedia pathwaysVSTM5
Orthology - Evolution
OrthoDB387804
Phylogenetic Trees/Animal Genes : TreeFamVSTM5
HOVERGENA8MXK1
HOGENOMA8MXK1
Homologs : HomoloGeneVSTM5
Homology/Alignments : Family Browser (UCSC)VSTM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM5
dbVarVSTM5
ClinVarVSTM5
1000_GenomesVSTM5 
Exome Variant ServerVSTM5
ExAC (Exome Aggregation Consortium)VSTM5 (select the gene name)
Genetic variants : HAPMAP387804
Genomic Variants (DGV)VSTM5 [DGVbeta]
DECIPHER (Syndromes)11:93553735-93583668  
CONAN: Copy Number AnalysisVSTM5 
Mutations
ICGC Data PortalVSTM5 
TCGA Data PortalVSTM5 
Broad Tumor PortalVSTM5
OASIS PortalVSTM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSTM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM5
DgiDB (Drug Gene Interaction Database)VSTM5
DoCM (Curated mutations)VSTM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM5 (select a term)
intoGenVSTM5
Cancer3DVSTM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVSTM5
Genetic Testing Registry VSTM5
NextProtA8MXK1 [Medical]
TSGene387804
GENETestsVSTM5
Huge Navigator VSTM5 [HugePedia]
snp3D : Map Gene to Disease387804
BioCentury BCIQVSTM5
ClinGenVSTM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387804
Chemical/Pharm GKB GenePA164716741
Clinical trialVSTM5
Miscellaneous
canSAR (ICR)VSTM5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM5
EVEXVSTM5
GoPubMedVSTM5
iHOPVSTM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:51:23 CET 2017

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