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VSX2 (visual system homeobox 2)

Identity

Alias_namesHOX10
CHX10
C elegans ceh-10 homeo domain-containing homolog
ceh-10 homeo domain containing homolog (C. elegans)
ceh-10 homeodomain containing homolog (C. elegans)
Alias_symbol (synonym)RET1
Other aliasMCOP2
MCOPCB3
HGNC (Hugo) VSX2
LocusID (NCBI) 338917
Atlas_Id 56086
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74706175 and ends at 74729441 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSX2   1975
Cards
Entrez_Gene (NCBI)VSX2  338917  visual system homeobox 2
AliasesCHX10; HOX10; MCOP2; MCOPCB3; 
RET1
GeneCards (Weizmann)VSX2
Ensembl hg19 (Hinxton)ENSG00000119614 [Gene_View]  chr14:74706175-74729441 [Contig_View]  VSX2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000119614 [Gene_View]  chr14:74706175-74729441 [Contig_View]  VSX2 [Vega]
ICGC DataPortalENSG00000119614
TCGA cBioPortalVSX2
AceView (NCBI)VSX2
Genatlas (Paris)VSX2
WikiGenes338917
SOURCE (Princeton)VSX2
Genetics Home Reference (NIH)VSX2
Genomic and cartography
GoldenPath hg19 (UCSC)VSX2  -     chr14:74706175-74729441 +  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VSX2  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblVSX2 - 14q24.3 [CytoView hg19]  VSX2 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIVSX2 [Mapview hg19]  VSX2 [Mapview hg38]
OMIM142993   610092   610093   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_182894
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSX2
Cluster EST : UnigeneHs.449771 [ NCBI ]
CGAP (NCI)Hs.449771
Alternative Splicing GalleryENSG00000119614
Gene ExpressionVSX2 [ NCBI-GEO ]   VSX2 [ EBI - ARRAY_EXPRESS ]   VSX2 [ SEEK ]   VSX2 [ MEM ]
Gene Expression Viewer (FireBrowse)VSX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338917
GTEX Portal (Tissue expression)VSX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58304   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58304  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58304
Splice isoforms : SwissVarP58304
PhosPhoSitePlusP58304
Domaine pattern : Prosite (Expaxy)CVC (PS51496)    HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    OAR (PS50803)   
Domains : Interpro (EBI)CVC    Homeobox_CS    Homeobox_dom    Homeodomain-like    OAR_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)    OAR (PF03826)   
Domain families : Pfam (NCBI)pfam00046    pfam03826   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)VSX2
DMDM Disease mutations338917
Blocks (Seattle)VSX2
SuperfamilyP58304
Human Protein AtlasENSG00000119614
Peptide AtlasP58304
HPRD08852
IPIIPI00033487   
Protein Interaction databases
DIP (DOE-UCLA)P58304
IntAct (EBI)P58304
FunCoupENSG00000119614
BioGRIDVSX2
STRING (EMBL)VSX2
ZODIACVSX2
Ontologies - Pathways
QuickGOP58304
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  visual perception  sequence-specific DNA binding  response to stimulus  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  visual perception  sequence-specific DNA binding  response to stimulus  
NDEx NetworkVSX2
Atlas of Cancer Signalling NetworkVSX2
Wikipedia pathwaysVSX2
Orthology - Evolution
OrthoDB338917
GeneTree (enSembl)ENSG00000119614
Phylogenetic Trees/Animal Genes : TreeFamVSX2
HOVERGENP58304
HOGENOMP58304
Homologs : HomoloGeneVSX2
Homology/Alignments : Family Browser (UCSC)VSX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSX2
dbVarVSX2
ClinVarVSX2
1000_GenomesVSX2 
Exome Variant ServerVSX2
ExAC (Exome Aggregation Consortium)VSX2 (select the gene name)
Genetic variants : HAPMAP338917
Genomic Variants (DGV)VSX2 [DGVbeta]
DECIPHER (Syndromes)14:74706175-74729441  ENSG00000119614
CONAN: Copy Number AnalysisVSX2 
Mutations
ICGC Data PortalVSX2 
TCGA Data PortalVSX2 
Broad Tumor PortalVSX2
OASIS PortalVSX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVSX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSX2
DgiDB (Drug Gene Interaction Database)VSX2
DoCM (Curated mutations)VSX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSX2 (select a term)
intoGenVSX2
Cancer3DVSX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142993    610092    610093   
Orphanet3713    13955   
MedgenVSX2
Genetic Testing Registry VSX2
NextProtP58304 [Medical]
TSGene338917
GENETestsVSX2
Huge Navigator VSX2 [HugePedia]
snp3D : Map Gene to Disease338917
BioCentury BCIQVSX2
ClinGenVSX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338917
Chemical/Pharm GKB GenePA26511
Clinical trialVSX2
Miscellaneous
canSAR (ICR)VSX2 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSX2
EVEXVSX2
GoPubMedVSX2
iHOPVSX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:34:01 CET 2017

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