Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VTA1 (vesicle trafficking 1)

Identity

Alias (NCBI)6orf55
C6orf55
DRG-1
DRG1
HSPC228
LIP5
My012
SBP1
HGNC (Hugo) VTA1
HGNC Alias symbHSPC228
My012
HGNC Previous nameC6orf55
HGNC Previous namechromosome 6 open reading frame 55
 Vps20-associated 1 homolog (S. cerevisiae)
 vesicle (multivesicular body) trafficking 1
LocusID (NCBI) 51534
Atlas_Id 75657
Location 6q24.1  [Link to chromosome band 6q24]
Location_base_pair Starts at 142147263 and ends at 142224684 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADGRG6 (6q24.1)::VTA1 (6q24.1)NHSL1 (6q23.3)::VTA1 (6q24.1)VTA1 (6q24.1)::HEBP2 (6q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VTA1   20954
Cards
Entrez_Gene (NCBI)VTA1    vesicle trafficking 1
Aliases6orf55; C6orf55; DRG-1; DRG1; 
HSPC228; LIP5; My012; SBP1
GeneCards (Weizmann)VTA1
Ensembl hg19 (Hinxton)ENSG00000009844 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000009844 [Gene_View]  ENSG00000009844 [Sequence]  chr6:142147263-142224684 [Contig_View]  VTA1 [Vega]
ICGC DataPortalENSG00000009844
TCGA cBioPortalVTA1
AceView (NCBI)VTA1
Genatlas (Paris)VTA1
SOURCE (Princeton)VTA1
Genetics Home Reference (NIH)VTA1
Genomic and cartography
GoldenPath hg38 (UCSC)VTA1  -     chr6:142147263-142224684 +  6q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VTA1  -     6q24.1   [Description]    (hg19-Feb_2009)
GoldenPathVTA1 - 6q24.1 [CytoView hg19]  VTA1 - 6q24.1 [CytoView hg38]
ImmunoBaseENSG00000009844
Genome Data Viewer NCBIVTA1 [Mapview hg19]  
OMIM610902   
Gene and transcription
Genbank (Entrez)AF060225 AF141341 AF151062 AF271994 AJ420507
RefSeq transcript (Entrez)NM_001286371 NM_001286372 NM_016485
Consensus coding sequences : CCDS (NCBI)VTA1
Gene ExpressionVTA1 [ NCBI-GEO ]   VTA1 [ EBI - ARRAY_EXPRESS ]   VTA1 [ SEEK ]   VTA1 [ MEM ]
Gene Expression Viewer (FireBrowse)VTA1 [ Firebrowse - Broad ]
GenevisibleExpression of VTA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51534
GTEX Portal (Tissue expression)VTA1
Human Protein AtlasENSG00000009844-VTA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP79
PhosPhoSitePlusQ9NP79
Domains : Interpro (EBI)VPS_Vta1/CALS_N    Vta1/CALS_N    Vta1_C   
Domain families : Pfam (Sanger)Vta1 (PF04652)    Vta1_C (PF18097)   
Domain families : Pfam (NCBI)pfam04652    pfam18097   
Conserved Domain (NCBI)VTA1
PDB (RSDB)2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
PDB Europe2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
PDB (PDBSum)2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
PDB (IMB)2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
Structural Biology KnowledgeBase2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
SCOP (Structural Classification of Proteins)2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
CATH (Classification of proteins structures)2LXL    2LXM    4TXP    4TXQ    4TXR    4U7E   
SuperfamilyQ9NP79
AlphaFold pdb e-kbQ9NP79   
Human Protein Atlas [tissue]ENSG00000009844-VTA1 [tissue]
HPRD09855
Protein Interaction databases
DIP (DOE-UCLA)Q9NP79
IntAct (EBI)Q9NP79
BioGRIDVTA1
STRING (EMBL)VTA1
ZODIACVTA1
Ontologies - Pathways
QuickGOQ9NP79
Ontology : AmiGOprotein binding  nucleoplasm  multivesicular body  cytosol  cytosol  protein C-terminus binding  endosome membrane  protein transport  endosomal transport  macroautophagy  viral life cycle  late endosome to vacuole transport via multivesicular body sorting pathway  multivesicular body assembly  intracellular membrane-bounded organelle  viral budding  extracellular exosome  multivesicular body sorting pathway  ESCRT III complex disassembly  
Ontology : EGO-EBIprotein binding  nucleoplasm  multivesicular body  cytosol  cytosol  protein C-terminus binding  endosome membrane  protein transport  endosomal transport  macroautophagy  viral life cycle  late endosome to vacuole transport via multivesicular body sorting pathway  multivesicular body assembly  intracellular membrane-bounded organelle  viral budding  extracellular exosome  multivesicular body sorting pathway  ESCRT III complex disassembly  
NDEx NetworkVTA1
Atlas of Cancer Signalling NetworkVTA1
Wikipedia pathwaysVTA1
Orthology - Evolution
OrthoDB51534
GeneTree (enSembl)ENSG00000009844
Phylogenetic Trees/Animal Genes : TreeFamVTA1
Homologs : HomoloGeneVTA1
Homology/Alignments : Family Browser (UCSC)VTA1
Gene fusions - Rearrangements
Fusion : QuiverVTA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVTA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VTA1
dbVarVTA1
ClinVarVTA1
MonarchVTA1
1000_GenomesVTA1 
Exome Variant ServerVTA1
GNOMAD BrowserENSG00000009844
Varsome BrowserVTA1
ACMGVTA1 variants
VarityQ9NP79
Genomic Variants (DGV)VTA1 [DGVbeta]
DECIPHERVTA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVTA1 
Mutations
ICGC Data PortalVTA1 
TCGA Data PortalVTA1 
Broad Tumor PortalVTA1
OASIS PortalVTA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVTA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVTA1
Mutations and Diseases : HGMDVTA1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVTA1
DgiDB (Drug Gene Interaction Database)VTA1
DoCM (Curated mutations)VTA1
CIViC (Clinical Interpretations of Variants in Cancer)VTA1
Cancer3DVTA1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610902   
Orphanet
DisGeNETVTA1
MedgenVTA1
Genetic Testing Registry VTA1
NextProtQ9NP79 [Medical]
GENETestsVTA1
Target ValidationVTA1
Huge Navigator VTA1 [HugePedia]
ClinGenVTA1
Clinical trials, drugs, therapy
MyCancerGenomeVTA1
Protein Interactions : CTDVTA1
Pharm GKB GenePA162408932
PharosQ9NP79
Clinical trialVTA1
Miscellaneous
canSAR (ICR)VTA1
HarmonizomeVTA1
ARCHS4VTA1
DataMed IndexVTA1
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVTA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:31:54 CET 2022

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