| C1orf95 (1q42.12) / VTI1A (10q25.2) | FAM160B1 (10q25.3) / VTI1A (10q25.2) | NARS2 (11q14.1) / VTI1A (10q25.2) |
|
TCF7L2 (10q25.2) / VTI1A (10q25.2) | UXS1 (2q12.2) / VTI1A (10q25.2) | VTI1A (10q25.2) / C10orf90 (10q26.2) |
|
VTI1A (10q25.2) / SUGP2 (19p13.11) | VTI1A (10q25.2) / TCF7L2 (10q25.2) | VTI1A (10q25.2) / UBE2D1 (10q21.1) |
|
VTI1A TCF7L2 10q25.2 | C1orf95 1q42.12 / VTI1A 10q25.2 | FAM160B1 10q25.3 / VTI1A 10q25.2 |
|
VTI1A 10q25.2 / C10orf90 10q26.2 | VTI1A 10q25.2 / SUGP2 19p13.11 |
| Nomenclature |
HGNC (Hugo) | VTI1A 17792 |
| Cards |
Entrez_Gene (NCBI) | VTI1A vesicle transport through interaction with t-SNAREs 1A |
Aliases | MMDS3; MVti1; VTI1RP2; Vti1-rp2 |
GeneCards (Weizmann) | VTI1A |
Ensembl hg19 (Hinxton) | ENSG00000151532 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000151532 [Gene_View]  ENSG00000151532 [Sequence] chr10:112446988-112818744 [Contig_View] VTI1A [Vega] |
ICGC DataPortal | ENSG00000151532 |
TCGA cBioPortal | VTI1A |
AceView (NCBI) | VTI1A |
Genatlas (Paris) | VTI1A |
SOURCE (Princeton) | VTI1A |
Genetics Home Reference (NIH) | VTI1A |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | VTI1A - chr10:112446988-112818744 + 10q25.2 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | VTI1A - 10q25.2 [Description] (hg19-Feb_2009) |
GoldenPath | VTI1A - 10q25.2 [CytoView hg19] VTI1A - 10q25.2 [CytoView hg38] |
ImmunoBase | ENSG00000151532 |
genome Data Viewer NCBI | VTI1A [Mapview hg19] |
OMIM | 614316 |
| Gene and transcription |
Genbank (Entrez) | AI610960 AI693064 AI797732 AK026759 AK074471 |
RefSeq transcript (Entrez) | NM_001318203 NM_001318205 NM_001365710 NM_001365711 NM_001365712 NM_001365713 NM_001365714 NM_145206 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | VTI1A |
Alternative Splicing Gallery | ENSG00000151532 |
Gene Expression | VTI1A [ NCBI-GEO ] VTI1A [ EBI - ARRAY_EXPRESS ]
VTI1A [ SEEK ] VTI1A [ MEM ] |
Gene Expression Viewer (FireBrowse) | VTI1A [ Firebrowse - Broad ] |
Genevisible | Expression of VTI1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 143187 |
GTEX Portal (Tissue expression) | VTI1A |
Human Protein Atlas | ENSG00000151532-VTI1A [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q96AJ9 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q96AJ9 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q96AJ9 |
Splice isoforms : SwissVar | Q96AJ9 |
PhosPhoSitePlus | Q96AJ9 |
Domains : Interpro (EBI) | GOSR2/Membrin/Bos1 SNARE T_SNARE_dom v-SNARE_N_sf Vesicle_trsprt_v-SNARE_N |
Domain families : Pfam (Sanger) | V-SNARE (PF05008) |
Domain families : Pfam (NCBI) | pfam05008 |
Domain families : Smart (EMBL) | t_SNARE (SM00397) |
Conserved Domain (NCBI) | VTI1A |
Blocks (Seattle) | VTI1A |
Superfamily | Q96AJ9 |
Human Protein Atlas [tissue] | ENSG00000151532-VTI1A [tissue] |
Peptide Atlas | Q96AJ9 |
HPRD | 18290 |
IPI | IPI00059472 IPI00852968 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q96AJ9 |
IntAct (EBI) | Q96AJ9 |
BioGRID | VTI1A |
STRING (EMBL) | VTI1A |
ZODIAC | VTI1A |
| Ontologies - Pathways |
QuickGO | Q96AJ9 |
Ontology : AmiGO | Golgi membrane SNARE binding SNAP receptor activity SNAP receptor activity protein binding endosome autophagosome endoplasmic reticulum membrane Golgi apparatus Golgi apparatus cytosol protein targeting to vacuole ER to Golgi vesicle-mediated transport ER to Golgi vesicle-mediated transport intra-Golgi vesicle-mediated transport Golgi to vacuole transport autophagy synaptic vesicle ER to Golgi transport vesicle membrane integral component of membrane clathrin-coated vesicle SNARE complex SNARE complex SNARE complex late endosome membrane trans-Golgi network membrane retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi neuronal cell body intracellular membrane-bounded organelle neuron projection terminus vesicle fusion with Golgi apparatus vesicle fusion with Golgi apparatus perinuclear region of cytoplasm voluntary musculoskeletal movement Golgi ribbon formation |
Ontology : EGO-EBI | Golgi membrane SNARE binding SNAP receptor activity SNAP receptor activity protein binding endosome autophagosome endoplasmic reticulum membrane Golgi apparatus Golgi apparatus cytosol protein targeting to vacuole ER to Golgi vesicle-mediated transport ER to Golgi vesicle-mediated transport intra-Golgi vesicle-mediated transport Golgi to vacuole transport autophagy synaptic vesicle ER to Golgi transport vesicle membrane integral component of membrane clathrin-coated vesicle SNARE complex SNARE complex SNARE complex late endosome membrane trans-Golgi network membrane retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi neuronal cell body intracellular membrane-bounded organelle neuron projection terminus vesicle fusion with Golgi apparatus vesicle fusion with Golgi apparatus perinuclear region of cytoplasm voluntary musculoskeletal movement Golgi ribbon formation |
Pathways : KEGG | SNARE interactions in vesicular transport |
NDEx Network | VTI1A |
Atlas of Cancer Signalling Network | VTI1A |
Wikipedia pathways | VTI1A |
| Orthology - Evolution |
OrthoDB | 143187 |
GeneTree (enSembl) | ENSG00000151532 |
Phylogenetic Trees/Animal Genes : TreeFam | VTI1A |
HOGENOM | Q96AJ9 |
Homologs : HomoloGene | VTI1A |
Homology/Alignments : Family Browser (UCSC) | VTI1A |
| Gene fusions - Rearrangements |
Fusion : Mitelman | C1orf95/VTI1A [1q42.12/10q25.2]   |
Fusion : Mitelman | FAM160B1/VTI1A [10q25.3/10q25.2]   |
Fusion : Mitelman | VTI1A/C10orf90 [10q25.2/10q26.2]   |
Fusion : Mitelman | VTI1A/SUGP2 [10q25.2/19p13.11]   |
Fusion : Mitelman | VTI1A/TCF7L2 [10q25.2/10q25.2]   |
Fusion Portal | C1orf95 1q42.12 VTI1A 10q25.2 LUAD |
Fusion Portal | FAM160B1 10q25.3 VTI1A 10q25.2 PRAD |
Fusion Portal | VTI1A 10q25.2 C10orf90 10q26.2 LUAD |
Fusion Portal | VTI1A 10q25.2 SUGP2 19p13.11 PRAD |
Fusion : Quiver | VTI1A |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | VTI1A [hg38] |
dbVar | VTI1A |
ClinVar | VTI1A |
Monarch | VTI1A |
1000_Genomes | VTI1A |
Exome Variant Server | VTI1A |
GNOMAD Browser | ENSG00000151532 |
Varsome Browser | VTI1A |
Genomic Variants (DGV) | VTI1A [DGVbeta] |
DECIPHER | VTI1A [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | VTI1A |
| Mutations |
ICGC Data Portal | VTI1A |
TCGA Data Portal | VTI1A |
Broad Tumor Portal | VTI1A |
OASIS Portal | VTI1A [ Somatic mutations - Copy number] |
Cancer Gene: Census | VTI1A |
Somatic Mutations in Cancer : COSMIC | VTI1A [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | VTI1A |
Mutations and Diseases : HGMD | VTI1A |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search VTI1A |
DgiDB (Drug Gene Interaction Database) | VTI1A |
DoCM (Curated mutations) | VTI1A (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | VTI1A (select a term) |
intoGen | VTI1A |
Cancer3D | VTI1A(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 614316 |
Orphanet | |
DisGeNET | VTI1A |
Medgen | VTI1A |
Genetic Testing Registry | VTI1A
|
NextProt | Q96AJ9 [Medical] |
GENETests | VTI1A |
Target Validation | VTI1A |
Huge Navigator |
VTI1A [HugePedia] |
ClinGen | VTI1A |
| Clinical trials, drugs, therapy |
---|
MyCancerGenome | VTI1A |
Protein Interactions : CTD | |
Pharm GKB Gene | PA134928049 |
Pharos | Q96AJ9 |
Clinical trial | VTI1A |
| Miscellaneous |
---|
canSAR (ICR) | VTI1A (select the gene name) |
Harmonizome | VTI1A |
DataMed Index | VTI1A |
| Probes |
---|
| Litterature |
---|
PubMed | 52 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
EVEX | VTI1A |