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VTI1A (vesicle transport through interaction with t-SNAREs 1A)

Identity

Alias (NCBI)MMDS3
MVti1
VTI1RP2
Vti1-rp2
HGNC (Hugo) VTI1A
HGNC Alias symbMVti1
Vti1-rp2
HGNC Previous namevesicle transport through interaction with t-SNAREs homolog 1A (yeast)
LocusID (NCBI) 143187
Atlas_Id 52508
Location 10q25.2  [Link to chromosome band 10q25]
Location_base_pair Starts at 112446988 and ends at 112818744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf95 (1q42.12) / VTI1A (10q25.2)FAM160B1 (10q25.3) / VTI1A (10q25.2)NARS2 (11q14.1) / VTI1A (10q25.2)
TCF7L2 (10q25.2) / VTI1A (10q25.2)UXS1 (2q12.2) / VTI1A (10q25.2)VTI1A (10q25.2) / C10orf90 (10q26.2)
VTI1A (10q25.2) / SUGP2 (19p13.11)VTI1A (10q25.2) / TCF7L2 (10q25.2)VTI1A (10q25.2) / UBE2D1 (10q21.1)
VTI1A 10q25.2 / TCF7L2 10q25.2C1orf95 1q42.12 / VTI1A 10q25.2FAM160B1 10q25.3 / VTI1A 10q25.2
VTI1A 10q25.2 / C10orf90 10q26.2VTI1A 10q25.2 / SUGP2 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)VTI1A   17792
Cards
Entrez_Gene (NCBI)VTI1A    vesicle transport through interaction with t-SNAREs 1A
AliasesMMDS3; MVti1; VTI1RP2; Vti1-rp2
GeneCards (Weizmann)VTI1A
Ensembl hg19 (Hinxton)ENSG00000151532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151532 [Gene_View]  ENSG00000151532 [Sequence]  chr10:112446988-112818744 [Contig_View]  VTI1A [Vega]
ICGC DataPortalENSG00000151532
TCGA cBioPortalVTI1A
AceView (NCBI)VTI1A
Genatlas (Paris)VTI1A
SOURCE (Princeton)VTI1A
Genetics Home Reference (NIH)VTI1A
Genomic and cartography
GoldenPath hg38 (UCSC)VTI1A  -     chr10:112446988-112818744 +  10q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VTI1A  -     10q25.2   [Description]    (hg19-Feb_2009)
GoldenPathVTI1A - 10q25.2 [CytoView hg19]  VTI1A - 10q25.2 [CytoView hg38]
ImmunoBaseENSG00000151532
Genome Data Viewer NCBIVTI1A [Mapview hg19]  
OMIM614316   
Gene and transcription
Genbank (Entrez)AI610960 AI693064 AI797732 AK026759 AK074471
RefSeq transcript (Entrez)NM_001318203 NM_001318205 NM_001365710 NM_001365711 NM_001365712 NM_001365713 NM_001365714 NM_145206
Consensus coding sequences : CCDS (NCBI)VTI1A
Gene ExpressionVTI1A [ NCBI-GEO ]   VTI1A [ EBI - ARRAY_EXPRESS ]   VTI1A [ SEEK ]   VTI1A [ MEM ]
Gene Expression Viewer (FireBrowse)VTI1A [ Firebrowse - Broad ]
GenevisibleExpression of VTI1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143187
GTEX Portal (Tissue expression)VTI1A
Human Protein AtlasENSG00000151532-VTI1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AJ9
PhosPhoSitePlusQ96AJ9
Domains : Interpro (EBI)GOSR2/Membrin/Bos1    SNARE    T_SNARE_dom    v-SNARE_N_sf    Vesicle_trsprt_v-SNARE_N   
Domain families : Pfam (Sanger)V-SNARE (PF05008)   
Domain families : Pfam (NCBI)pfam05008   
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)VTI1A
SuperfamilyQ96AJ9
AlphaFold pdb e-kbQ96AJ9   
Human Protein Atlas [tissue]ENSG00000151532-VTI1A [tissue]
HPRD18290
Protein Interaction databases
DIP (DOE-UCLA)Q96AJ9
IntAct (EBI)Q96AJ9
BioGRIDVTI1A
STRING (EMBL)VTI1A
ZODIACVTI1A
Ontologies - Pathways
QuickGOQ96AJ9
Ontology : AmiGOGolgi membrane  SNARE binding  SNAP receptor activity  SNAP receptor activity  protein binding  endosome  autophagosome  endoplasmic reticulum membrane  Golgi apparatus  Golgi apparatus  cytosol  protein targeting to vacuole  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  Golgi to vacuole transport  autophagy  synaptic vesicle  ER to Golgi transport vesicle membrane  integral component of membrane  clathrin-coated vesicle  SNARE complex  SNARE complex  SNARE complex  late endosome membrane  trans-Golgi network membrane  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  neuronal cell body  intracellular membrane-bounded organelle  neuron projection terminus  vesicle fusion with Golgi apparatus  vesicle fusion with Golgi apparatus  perinuclear region of cytoplasm  voluntary musculoskeletal movement  Golgi ribbon formation  
Ontology : EGO-EBIGolgi membrane  SNARE binding  SNAP receptor activity  SNAP receptor activity  protein binding  endosome  autophagosome  endoplasmic reticulum membrane  Golgi apparatus  Golgi apparatus  cytosol  protein targeting to vacuole  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  Golgi to vacuole transport  autophagy  synaptic vesicle  ER to Golgi transport vesicle membrane  integral component of membrane  clathrin-coated vesicle  SNARE complex  SNARE complex  SNARE complex  late endosome membrane  trans-Golgi network membrane  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  neuronal cell body  intracellular membrane-bounded organelle  neuron projection terminus  vesicle fusion with Golgi apparatus  vesicle fusion with Golgi apparatus  perinuclear region of cytoplasm  voluntary musculoskeletal movement  Golgi ribbon formation  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkVTI1A
Atlas of Cancer Signalling NetworkVTI1A
Wikipedia pathwaysVTI1A
Orthology - Evolution
OrthoDB143187
GeneTree (enSembl)ENSG00000151532
Phylogenetic Trees/Animal Genes : TreeFamVTI1A
Homologs : HomoloGeneVTI1A
Homology/Alignments : Family Browser (UCSC)VTI1A
Gene fusions - Rearrangements
Fusion : MitelmanC1orf95/VTI1A [1q42.12/10q25.2]  
Fusion : MitelmanFAM160B1/VTI1A [10q25.3/10q25.2]  
Fusion : MitelmanVTI1A/C10orf90 [10q25.2/10q26.2]  
Fusion : MitelmanVTI1A/SUGP2 [10q25.2/19p13.11]  
Fusion : MitelmanVTI1A/TCF7L2 [10q25.2/10q25.2]  
Fusion : QuiverVTI1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVTI1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VTI1A
dbVarVTI1A
ClinVarVTI1A
MonarchVTI1A
1000_GenomesVTI1A 
Exome Variant ServerVTI1A
GNOMAD BrowserENSG00000151532
Varsome BrowserVTI1A
ACMGVTI1A variants
VarityQ96AJ9
Genomic Variants (DGV)VTI1A [DGVbeta]
DECIPHERVTI1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVTI1A 
Mutations
ICGC Data PortalVTI1A 
TCGA Data PortalVTI1A 
Broad Tumor PortalVTI1A
OASIS PortalVTI1A [ Somatic mutations - Copy number]
Cancer Gene: CensusVTI1A 
Somatic Mutations in Cancer : COSMICVTI1A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVTI1A
Mutations and Diseases : HGMDVTI1A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVTI1A
DgiDB (Drug Gene Interaction Database)VTI1A
DoCM (Curated mutations)VTI1A
CIViC (Clinical Interpretations of Variants in Cancer)VTI1A
Cancer3DVTI1A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614316   
Orphanet
DisGeNETVTI1A
MedgenVTI1A
Genetic Testing Registry VTI1A
NextProtQ96AJ9 [Medical]
GENETestsVTI1A
Target ValidationVTI1A
Huge Navigator VTI1A [HugePedia]
ClinGenVTI1A
Clinical trials, drugs, therapy
MyCancerGenomeVTI1A
Protein Interactions : CTDVTI1A
Pharm GKB GenePA134928049
PharosQ96AJ9
Clinical trialVTI1A
Miscellaneous
canSAR (ICR)VTI1A
HarmonizomeVTI1A
DataMed IndexVTI1A
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVTI1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:10 CEST 2021
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