Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VTRNA1-1 (vault RNA 1-1)

Identity

Alias_namesVAULTRC1
vault RNA component 1
Alias_symbol (synonym)vtRNA1-1
hvg-1
HVG1
vRNA
VR1
Other alias
HGNC (Hugo) VTRNA1-1
LocusID (NCBI) 56664
Atlas_Id 75658
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140711276 and ends at 140711373 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VTRNA1-1   12654
Cards
Entrez_Gene (NCBI)VTRNA1-1  56664  vault RNA 1-1
AliasesHVG1; VAULTRC1; VR1; hvg-1; 
vRNA
GeneCards (Weizmann)VTRNA1-1
Ensembl hg19 (Hinxton)ENSG00000199990 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199990 [Gene_View]  chr5:140711276-140711373 [Contig_View]  VTRNA1-1 [Vega]
ICGC DataPortalENSG00000199990
TCGA cBioPortalVTRNA1-1
AceView (NCBI)VTRNA1-1
Genatlas (Paris)VTRNA1-1
WikiGenes56664
SOURCE (Princeton)VTRNA1-1
Genetics Home Reference (NIH)VTRNA1-1
Genomic and cartography
GoldenPath hg38 (UCSC)VTRNA1-1  -     chr5:140711276-140711373 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VTRNA1-1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblVTRNA1-1 - 5q31.3 [CytoView hg19]  VTRNA1-1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIVTRNA1-1 [Mapview hg19]  VTRNA1-1 [Mapview hg38]
OMIM612695   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VTRNA1-1
Alternative Splicing GalleryENSG00000199990
Gene ExpressionVTRNA1-1 [ NCBI-GEO ]   VTRNA1-1 [ EBI - ARRAY_EXPRESS ]   VTRNA1-1 [ SEEK ]   VTRNA1-1 [ MEM ]
Gene Expression Viewer (FireBrowse)VTRNA1-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)56664
GTEX Portal (Tissue expression)VTRNA1-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VTRNA1-1
DMDM Disease mutations56664
Blocks (Seattle)VTRNA1-1
Human Protein AtlasENSG00000199990
Protein Interaction databases
FunCoupENSG00000199990
BioGRIDVTRNA1-1
STRING (EMBL)VTRNA1-1
ZODIACVTRNA1-1
Ontologies - Pathways
Huge Navigator VTRNA1-1 [HugePedia]
snp3D : Map Gene to Disease56664
BioCentury BCIQVTRNA1-1
ClinGenVTRNA1-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56664
Chemical/Pharm GKB GenePA37277
Clinical trialVTRNA1-1
Miscellaneous
canSAR (ICR)VTRNA1-1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVTRNA1-1
EVEXVTRNA1-1
GoPubMedVTRNA1-1
iHOPVTRNA1-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:43:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.