Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VTRNA1-3 (vault RNA 1-3)

Identity

Alias_namesVAULTRC3
vault RNA component 3
Alias_symbol (synonym)vtRNA1-3
hvg-3
HVG3
VR3
Other alias
HGNC (Hugo) VTRNA1-3
LocusID (NCBI) 56662
Atlas_Id 75660
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140726159 and ends at 140726246 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VTRNA1-3   12656
Cards
Entrez_Gene (NCBI)VTRNA1-3  56662  vault RNA 1-3
AliasesHVG3; VAULTRC3; VR3; hvg-3
GeneCards (Weizmann)VTRNA1-3
Ensembl hg19 (Hinxton)ENSG00000202515 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000202515 [Gene_View]  chr5:140726159-140726246 [Contig_View]  VTRNA1-3 [Vega]
ICGC DataPortalENSG00000202515
TCGA cBioPortalVTRNA1-3
AceView (NCBI)VTRNA1-3
Genatlas (Paris)VTRNA1-3
WikiGenes56662
SOURCE (Princeton)VTRNA1-3
Genetics Home Reference (NIH)VTRNA1-3
Genomic and cartography
GoldenPath hg38 (UCSC)VTRNA1-3  -     chr5:140726159-140726246 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VTRNA1-3  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblVTRNA1-3 - 5q31.3 [CytoView hg19]  VTRNA1-3 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIVTRNA1-3 [Mapview hg19]  VTRNA1-3 [Mapview hg38]
OMIM612697   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VTRNA1-3
Alternative Splicing GalleryENSG00000202515
Gene ExpressionVTRNA1-3 [ NCBI-GEO ]   VTRNA1-3 [ EBI - ARRAY_EXPRESS ]   VTRNA1-3 [ SEEK ]   VTRNA1-3 [ MEM ]
Gene Expression Viewer (FireBrowse)VTRNA1-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)56662
GTEX Portal (Tissue expression)VTRNA1-3
Human Protein AtlasENSG00000202515-VTRNA1-3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VTRNA1-3
DMDM Disease mutations56662
Blocks (Seattle)VTRNA1-3
Human Protein Atlas [tissue]ENSG00000202515-VTRNA1-3 [tissue]
Protein Interaction databases
FunCoupENSG00000202515
BioGRIDVTRNA1-3
STRING (EMBL)VTRNA1-3
ZODIACVTRNA1-3
Ontologies - Pathways
Huge Navigator VTRNA1-3 [HugePedia]
snp3D : Map Gene to Disease56662
BioCentury BCIQVTRNA1-3
ClinGenVTRNA1-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56662
Chemical/Pharm GKB GenePA37279
Clinical trialVTRNA1-3
Miscellaneous
canSAR (ICR)VTRNA1-3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVTRNA1-3
EVEXVTRNA1-3
GoPubMedVTRNA1-3
iHOPVTRNA1-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:13:21 CET 2017

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