Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VTRNA2-1 (vault RNA 2-1)

Identity

Alias_namesMIR886
MIRN886
VTRNA2
microRNA 886
vault RNA 2
Alias_symbol (synonym)vtRNA2
hvg-5
CBL-3
hsa-mir-886
nc886
Other aliasCBL3
svtRNA2-1a
HGNC (Hugo) VTRNA2-1
LocusID (NCBI) 100126299
Atlas_Id 52618
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 136080491 and ends at 136080598 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VTRNA2-1   37054
LRG (Locus Reference Genomic)LRG_1104
Cards
Entrez_Gene (NCBI)VTRNA2-1  100126299  vault RNA 2-1
AliasesCBL-3; CBL3; MIR886; MIRN886; 
VTRNA2; hsa-mir-886; hvg-5; nc886; svtRNA2-1a
GeneCards (Weizmann)VTRNA2-1
Ensembl hg19 (Hinxton)ENSG00000278815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278815 [Gene_View]  chr5:136080491-136080598 [Contig_View]  VTRNA2-1 [Vega]
ICGC DataPortalENSG00000278815
TCGA cBioPortalVTRNA2-1
AceView (NCBI)VTRNA2-1
Genatlas (Paris)VTRNA2-1
WikiGenes100126299
SOURCE (Princeton)VTRNA2-1
Genetics Home Reference (NIH)VTRNA2-1
Genomic and cartography
GoldenPath hg38 (UCSC)VTRNA2-1  -     chr5:136080491-136080598 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VTRNA2-1  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblVTRNA2-1 - 5q31.1 [CytoView hg19]  VTRNA2-1 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIVTRNA2-1 [Mapview hg19]  VTRNA2-1 [Mapview hg38]
OMIM614938   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VTRNA2-1
Alternative Splicing GalleryENSG00000278815
Gene ExpressionVTRNA2-1 [ NCBI-GEO ]   VTRNA2-1 [ EBI - ARRAY_EXPRESS ]   VTRNA2-1 [ SEEK ]   VTRNA2-1 [ MEM ]
Gene Expression Viewer (FireBrowse)VTRNA2-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100126299
GTEX Portal (Tissue expression)VTRNA2-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VTRNA2-1
DMDM Disease mutations100126299
Blocks (Seattle)VTRNA2-1
Human Protein AtlasENSG00000278815
Protein Interaction databases
FunCoupENSG00000278815
BioGRIDVTRNA2-1
STRING (EMBL)VTRNA2-1
ZODIACVTRNA2-1
Ontologies - Pathways
Huge Navigator VTRNA2-1 [HugePedia]
snp3D : Map Gene to Disease100126299
BioCentury BCIQVTRNA2-1
ClinGenVTRNA2-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100126299
Chemical/Pharm GKB GenePA164722986
Clinical trialVTRNA2-1
Miscellaneous
canSAR (ICR)VTRNA2-1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVTRNA2-1
EVEXVTRNA2-1
GoPubMedVTRNA2-1
iHOPVTRNA2-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:48 CEST 2017

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