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VWA1 (von Willebrand factor A domain containing 1)

Identity

Alias_symbol (synonym)FLJ22215
VWA-1
WARP
Other alias
HGNC (Hugo) VWA1
LocusID (NCBI) 64856
Atlas_Id 75661
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1435523 and ends at 1442882 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VWA1   30910
Cards
Entrez_Gene (NCBI)VWA1  64856  von Willebrand factor A domain containing 1
AliasesWARP
GeneCards (Weizmann)VWA1
Ensembl hg19 (Hinxton)ENSG00000179403 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179403 [Gene_View]  chr1:1435523-1442882 [Contig_View]  VWA1 [Vega]
ICGC DataPortalENSG00000179403
TCGA cBioPortalVWA1
AceView (NCBI)VWA1
Genatlas (Paris)VWA1
WikiGenes64856
SOURCE (Princeton)VWA1
Genetics Home Reference (NIH)VWA1
Genomic and cartography
GoldenPath hg38 (UCSC)VWA1  -     chr1:1435523-1442882 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VWA1  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblVWA1 - 1p36.33 [CytoView hg19]  VWA1 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIVWA1 [Mapview hg19]  VWA1 [Mapview hg38]
OMIM611901   
Gene and transcription
Genbank (Entrez)AK025868 AK075366 AK096773 AK291557 AL137722
RefSeq transcript (Entrez)NM_022834 NM_199121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VWA1
Cluster EST : UnigeneHs.449009 [ NCBI ]
CGAP (NCI)Hs.449009
Alternative Splicing GalleryENSG00000179403
Gene ExpressionVWA1 [ NCBI-GEO ]   VWA1 [ EBI - ARRAY_EXPRESS ]   VWA1 [ SEEK ]   VWA1 [ MEM ]
Gene Expression Viewer (FireBrowse)VWA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64856
GTEX Portal (Tissue expression)VWA1
Human Protein AtlasENSG00000179403-VWA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCB0
Splice isoforms : SwissVarQ6PCB0
PhosPhoSitePlusQ6PCB0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    VWFA (PS50234)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    VWF_A   
Domain families : Pfam (Sanger)fn3 (PF00041)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam00041    pfam00092   
Domain families : Smart (EMBL)FN3 (SM00060)  VWA (SM00327)  
Conserved Domain (NCBI)VWA1
DMDM Disease mutations64856
Blocks (Seattle)VWA1
SuperfamilyQ6PCB0
Human Protein Atlas [tissue]ENSG00000179403-VWA1 [tissue]
Peptide AtlasQ6PCB0
HPRD18292
IPIIPI00396383   IPI00010221   IPI00953962   
Protein Interaction databases
DIP (DOE-UCLA)Q6PCB0
IntAct (EBI)Q6PCB0
FunCoupENSG00000179403
BioGRIDVWA1
STRING (EMBL)VWA1
ZODIACVWA1
Ontologies - Pathways
QuickGOQ6PCB0
Ontology : AmiGObasement membrane  interstitial matrix  extracellular space  extracellular matrix organization  identical protein binding  behavioral response to pain  extracellular exosome  
Ontology : EGO-EBIbasement membrane  interstitial matrix  extracellular space  extracellular matrix organization  identical protein binding  behavioral response to pain  extracellular exosome  
NDEx NetworkVWA1
Atlas of Cancer Signalling NetworkVWA1
Wikipedia pathwaysVWA1
Orthology - Evolution
OrthoDB64856
GeneTree (enSembl)ENSG00000179403
Phylogenetic Trees/Animal Genes : TreeFamVWA1
HOVERGENQ6PCB0
HOGENOMQ6PCB0
Homologs : HomoloGeneVWA1
Homology/Alignments : Family Browser (UCSC)VWA1
Gene fusions - Rearrangements
Tumor Fusion PortalVWA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVWA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VWA1
dbVarVWA1
ClinVarVWA1
1000_GenomesVWA1 
Exome Variant ServerVWA1
ExAC (Exome Aggregation Consortium)ENSG00000179403
GNOMAD BrowserENSG00000179403
Genetic variants : HAPMAP64856
Genomic Variants (DGV)VWA1 [DGVbeta]
DECIPHERVWA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVWA1 
Mutations
ICGC Data PortalVWA1 
TCGA Data PortalVWA1 
Broad Tumor PortalVWA1
OASIS PortalVWA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVWA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVWA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VWA1
DgiDB (Drug Gene Interaction Database)VWA1
DoCM (Curated mutations)VWA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VWA1 (select a term)
intoGenVWA1
Cancer3DVWA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611901   
Orphanet
DisGeNETVWA1
MedgenVWA1
Genetic Testing Registry VWA1
NextProtQ6PCB0 [Medical]
TSGene64856
GENETestsVWA1
Target ValidationVWA1
Huge Navigator VWA1 [HugePedia]
snp3D : Map Gene to Disease64856
BioCentury BCIQVWA1
ClinGenVWA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64856
Chemical/Pharm GKB GenePA142670612
Clinical trialVWA1
Miscellaneous
canSAR (ICR)VWA1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVWA1
EVEXVWA1
GoPubMedVWA1
iHOPVWA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:03:38 CET 2017

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