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VWA3A (von Willebrand factor A domain containing 3A)

Identity

Alias_symbol (synonym)FLJ46765
FLJ40941
Other alias-
HGNC (Hugo) VWA3A
LocusID (NCBI) 146177
Atlas_Id 75662
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22092538 and ends at 22156966 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EEF2K (16p12.2) / VWA3A (16p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VWA3A   27088
Cards
Entrez_Gene (NCBI)VWA3A  146177  von Willebrand factor A domain containing 3A
Aliases
GeneCards (Weizmann)VWA3A
Ensembl hg19 (Hinxton)ENSG00000175267 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175267 [Gene_View]  chr16:22092538-22156966 [Contig_View]  VWA3A [Vega]
ICGC DataPortalENSG00000175267
TCGA cBioPortalVWA3A
AceView (NCBI)VWA3A
Genatlas (Paris)VWA3A
WikiGenes146177
SOURCE (Princeton)VWA3A
Genetics Home Reference (NIH)VWA3A
Genomic and cartography
GoldenPath hg38 (UCSC)VWA3A  -     chr16:22092538-22156966 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VWA3A  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblVWA3A - 16p12.2 [CytoView hg19]  VWA3A - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIVWA3A [Mapview hg19]  VWA3A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093467 AK098260 AK128606 AK307544 AY360464
RefSeq transcript (Entrez)NM_173615 NM_175059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VWA3A
Cluster EST : UnigeneHs.10697 [ NCBI ]
CGAP (NCI)Hs.10697
Alternative Splicing GalleryENSG00000175267
Gene ExpressionVWA3A [ NCBI-GEO ]   VWA3A [ EBI - ARRAY_EXPRESS ]   VWA3A [ SEEK ]   VWA3A [ MEM ]
Gene Expression Viewer (FireBrowse)VWA3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146177
GTEX Portal (Tissue expression)VWA3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCI4
Splice isoforms : SwissVarA6NCI4
PhosPhoSitePlusA6NCI4
Domaine pattern : Prosite (Expaxy)VWFA (PS50234)   
Domains : Interpro (EBI)VWF_A   
Domain families : Pfam (Sanger)VWA_3 (PF13768)   
Domain families : Pfam (NCBI)pfam13768   
Domain families : Smart (EMBL)VWA (SM00327)  
Conserved Domain (NCBI)VWA3A
DMDM Disease mutations146177
Blocks (Seattle)VWA3A
SuperfamilyA6NCI4
Human Protein AtlasENSG00000175267
Peptide AtlasA6NCI4
IPIIPI00740853   IPI00785000   IPI00887672   IPI00431403   IPI00167233   
Protein Interaction databases
DIP (DOE-UCLA)A6NCI4
IntAct (EBI)A6NCI4
FunCoupENSG00000175267
BioGRIDVWA3A
STRING (EMBL)VWA3A
ZODIACVWA3A
Ontologies - Pathways
QuickGOA6NCI4
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkVWA3A
Atlas of Cancer Signalling NetworkVWA3A
Wikipedia pathwaysVWA3A
Orthology - Evolution
OrthoDB146177
GeneTree (enSembl)ENSG00000175267
Phylogenetic Trees/Animal Genes : TreeFamVWA3A
HOVERGENA6NCI4
HOGENOMA6NCI4
Homologs : HomoloGeneVWA3A
Homology/Alignments : Family Browser (UCSC)VWA3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVWA3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VWA3A
dbVarVWA3A
ClinVarVWA3A
1000_GenomesVWA3A 
Exome Variant ServerVWA3A
ExAC (Exome Aggregation Consortium)VWA3A (select the gene name)
Genetic variants : HAPMAP146177
Genomic Variants (DGV)VWA3A [DGVbeta]
DECIPHERVWA3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVWA3A 
Mutations
ICGC Data PortalVWA3A 
TCGA Data PortalVWA3A 
Broad Tumor PortalVWA3A
OASIS PortalVWA3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVWA3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVWA3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VWA3A
DgiDB (Drug Gene Interaction Database)VWA3A
DoCM (Curated mutations)VWA3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VWA3A (select a term)
intoGenVWA3A
Cancer3DVWA3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVWA3A
Genetic Testing Registry VWA3A
NextProtA6NCI4 [Medical]
TSGene146177
GENETestsVWA3A
Target ValidationVWA3A
Huge Navigator VWA3A [HugePedia]
snp3D : Map Gene to Disease146177
BioCentury BCIQVWA3A
ClinGenVWA3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146177
Chemical/Pharm GKB GenePA162408933
Clinical trialVWA3A
Miscellaneous
canSAR (ICR)VWA3A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVWA3A
EVEXVWA3A
GoPubMedVWA3A
iHOPVWA3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:45 CEST 2017

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