Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VWA5B2 (von Willebrand factor A domain containing 5B2)

Identity

Alias_symbol (synonym)DKFZp761K032
LOC90113
Other alias-
HGNC (Hugo) VWA5B2
LocusID (NCBI) 90113
Atlas_Id 75665
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184233416 and ends at 184242329 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VWA5B2   25144
Cards
Entrez_Gene (NCBI)VWA5B2  90113  von Willebrand factor A domain containing 5B2
Aliases
GeneCards (Weizmann)VWA5B2
Ensembl hg19 (Hinxton)ENSG00000145198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145198 [Gene_View]  chr3:184233416-184242329 [Contig_View]  VWA5B2 [Vega]
ICGC DataPortalENSG00000145198
TCGA cBioPortalVWA5B2
AceView (NCBI)VWA5B2
Genatlas (Paris)VWA5B2
WikiGenes90113
SOURCE (Princeton)VWA5B2
Genetics Home Reference (NIH)VWA5B2
Genomic and cartography
GoldenPath hg38 (UCSC)VWA5B2  -     chr3:184233416-184242329 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VWA5B2  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblVWA5B2 - 3q27.1 [CytoView hg19]  VWA5B2 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIVWA5B2 [Mapview hg19]  VWA5B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293885 AL834499 BC001200 BC009862 BC136609
RefSeq transcript (Entrez)NM_001320373 NM_138345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VWA5B2
Cluster EST : UnigeneHs.584997 [ NCBI ]
CGAP (NCI)Hs.584997
Alternative Splicing GalleryENSG00000145198
Gene ExpressionVWA5B2 [ NCBI-GEO ]   VWA5B2 [ EBI - ARRAY_EXPRESS ]   VWA5B2 [ SEEK ]   VWA5B2 [ MEM ]
Gene Expression Viewer (FireBrowse)VWA5B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90113
GTEX Portal (Tissue expression)VWA5B2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N398   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N398  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N398
Splice isoforms : SwissVarQ8N398
PhosPhoSitePlusQ8N398
Domaine pattern : Prosite (Expaxy)VIT (PS51468)   
Domains : Interpro (EBI)VIT    VWF_A   
Domain families : Pfam (Sanger)VIT_2 (PF13757)    VWA_3 (PF13768)   
Domain families : Pfam (NCBI)pfam13757    pfam13768   
Conserved Domain (NCBI)VWA5B2
DMDM Disease mutations90113
Blocks (Seattle)VWA5B2
SuperfamilyQ8N398
Human Protein AtlasENSG00000145198
Peptide AtlasQ8N398
IPIIPI01011562   IPI00038139   IPI00973380   
Protein Interaction databases
DIP (DOE-UCLA)Q8N398
IntAct (EBI)Q8N398
FunCoupENSG00000145198
BioGRIDVWA5B2
STRING (EMBL)VWA5B2
ZODIACVWA5B2
Ontologies - Pathways
QuickGOQ8N398
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkVWA5B2
Atlas of Cancer Signalling NetworkVWA5B2
Wikipedia pathwaysVWA5B2
Orthology - Evolution
OrthoDB90113
GeneTree (enSembl)ENSG00000145198
Phylogenetic Trees/Animal Genes : TreeFamVWA5B2
HOVERGENQ8N398
HOGENOMQ8N398
Homologs : HomoloGeneVWA5B2
Homology/Alignments : Family Browser (UCSC)VWA5B2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVWA5B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VWA5B2
dbVarVWA5B2
ClinVarVWA5B2
1000_GenomesVWA5B2 
Exome Variant ServerVWA5B2
ExAC (Exome Aggregation Consortium)VWA5B2 (select the gene name)
Genetic variants : HAPMAP90113
Genomic Variants (DGV)VWA5B2 [DGVbeta]
DECIPHERVWA5B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVWA5B2 
Mutations
ICGC Data PortalVWA5B2 
TCGA Data PortalVWA5B2 
Broad Tumor PortalVWA5B2
OASIS PortalVWA5B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVWA5B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVWA5B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VWA5B2
DgiDB (Drug Gene Interaction Database)VWA5B2
DoCM (Curated mutations)VWA5B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VWA5B2 (select a term)
intoGenVWA5B2
Cancer3DVWA5B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVWA5B2
Genetic Testing Registry VWA5B2
NextProtQ8N398 [Medical]
TSGene90113
GENETestsVWA5B2
Target ValidationVWA5B2
Huge Navigator VWA5B2 [HugePedia]
snp3D : Map Gene to Disease90113
BioCentury BCIQVWA5B2
ClinGenVWA5B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90113
Chemical/Pharm GKB GenePA162409079
Clinical trialVWA5B2
Miscellaneous
canSAR (ICR)VWA5B2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVWA5B2
EVEXVWA5B2
GoPubMedVWA5B2
iHOPVWA5B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:43:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.