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VWA7 (von Willebrand factor A domain containing 7)

Identity

Alias_namesC6orf27
chromosome 6 open reading frame 27
Alias_symbol (synonym)G7c
NG37
Other alias
HGNC (Hugo) VWA7
LocusID (NCBI) 80737
Atlas_Id 75666
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31733371 and ends at 31745108 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TOPBP1 (3q22.1) / VWA7 (6p21.33)VWA7 (6p21.33) / PPP1R13B (14q32.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VWA7   13939
Cards
Entrez_Gene (NCBI)VWA7  80737  von Willebrand factor A domain containing 7
AliasesC6orf27; G7c; NG37
GeneCards (Weizmann)VWA7
Ensembl hg19 (Hinxton)ENSG00000204396 [Gene_View]  chr6:31733371-31745108 [Contig_View]  VWA7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204396 [Gene_View]  chr6:31733371-31745108 [Contig_View]  VWA7 [Vega]
ICGC DataPortalENSG00000204396
TCGA cBioPortalVWA7
AceView (NCBI)VWA7
Genatlas (Paris)VWA7
WikiGenes80737
SOURCE (Princeton)VWA7
Genetics Home Reference (NIH)VWA7
Genomic and cartography
GoldenPath hg19 (UCSC)VWA7  -     chr6:31733371-31745108 -  6p21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VWA7  -     6p21.33   [Description]    (hg38-Dec_2013)
EnsemblVWA7 - 6p21.33 [CytoView hg19]  VWA7 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIVWA7 [Mapview hg19]  VWA7 [Mapview hg38]
OMIM609693   
Gene and transcription
Genbank (Entrez)AJ245418 AK304058 AK304266 BC114625 BC167823
RefSeq transcript (Entrez)NM_025258
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NT_113891 NT_167244 NT_167245 NT_167247 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)VWA7
Cluster EST : UnigeneHs.558553 [ NCBI ]
CGAP (NCI)Hs.558553
Alternative Splicing GalleryENSG00000204396
Gene ExpressionVWA7 [ NCBI-GEO ]   VWA7 [ EBI - ARRAY_EXPRESS ]   VWA7 [ SEEK ]   VWA7 [ MEM ]
Gene Expression Viewer (FireBrowse)VWA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80737
GTEX Portal (Tissue expression)VWA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y334   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y334  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y334
Splice isoforms : SwissVarQ9Y334
PhosPhoSitePlusQ9Y334
Domains : Interpro (EBI)VWF_A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)VWA (SM00327)  
Conserved Domain (NCBI)VWA7
DMDM Disease mutations80737
Blocks (Seattle)VWA7
SuperfamilyQ9Y334
Human Protein AtlasENSG00000204396
Peptide AtlasQ9Y334
HPRD12880
IPIIPI00640292   IPI00937525   IPI00908395   IPI00909304   IPI01022645   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y334
IntAct (EBI)Q9Y334
FunCoupENSG00000204396
BioGRIDVWA7
STRING (EMBL)VWA7
ZODIACVWA7
Ontologies - Pathways
QuickGOQ9Y334
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  biological_process  
NDEx NetworkVWA7
Atlas of Cancer Signalling NetworkVWA7
Wikipedia pathwaysVWA7
Orthology - Evolution
OrthoDB80737
GeneTree (enSembl)ENSG00000204396
Phylogenetic Trees/Animal Genes : TreeFamVWA7
HOVERGENQ9Y334
HOGENOMQ9Y334
Homologs : HomoloGeneVWA7
Homology/Alignments : Family Browser (UCSC)VWA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVWA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VWA7
dbVarVWA7
ClinVarVWA7
1000_GenomesVWA7 
Exome Variant ServerVWA7
ExAC (Exome Aggregation Consortium)VWA7 (select the gene name)
Genetic variants : HAPMAP80737
Genomic Variants (DGV)VWA7 [DGVbeta]
DECIPHER (Syndromes)6:31733371-31745108  ENSG00000204396
CONAN: Copy Number AnalysisVWA7 
Mutations
ICGC Data PortalVWA7 
TCGA Data PortalVWA7 
Broad Tumor PortalVWA7
OASIS PortalVWA7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVWA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VWA7
DgiDB (Drug Gene Interaction Database)VWA7
DoCM (Curated mutations)VWA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VWA7 (select a term)
intoGenVWA7
Cancer3DVWA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609693   
Orphanet
MedgenVWA7
Genetic Testing Registry VWA7
NextProtQ9Y334 [Medical]
TSGene80737
GENETestsVWA7
Huge Navigator VWA7 [HugePedia]
snp3D : Map Gene to Disease80737
BioCentury BCIQVWA7
ClinGenVWA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80737
Chemical/Pharm GKB GenePA25928
Clinical trialVWA7
Miscellaneous
canSAR (ICR)VWA7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVWA7
EVEXVWA7
GoPubMedVWA7
iHOPVWA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:25 CET 2017

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