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VWA9 (von Willebrand factor A domain containing 9)

Identity

Alias_namesC15orf44
chromosome 15 open reading frame 44
Alias_symbol (synonym)DKFZP564O1664
Other alias
HGNC (Hugo) VWA9
LocusID (NCBI) 81556
Atlas_Id 75669
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65871096 and ends at 65903627 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VWA9   25372
Cards
Entrez_Gene (NCBI)VWA9  81556  von Willebrand factor A domain containing 9
AliasesC15orf44
GeneCards (Weizmann)VWA9
Ensembl hg19 (Hinxton)ENSG00000138614 [Gene_View]  chr15:65871096-65903627 [Contig_View]  VWA9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138614 [Gene_View]  chr15:65871096-65903627 [Contig_View]  VWA9 [Vega]
ICGC DataPortalENSG00000138614
TCGA cBioPortalVWA9
AceView (NCBI)VWA9
Genatlas (Paris)VWA9
WikiGenes81556
SOURCE (Princeton)VWA9
Genetics Home Reference (NIH)VWA9
Genomic and cartography
GoldenPath hg19 (UCSC)VWA9  -     chr15:65871096-65903627 -  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VWA9  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblVWA9 - 15q22.31 [CytoView hg19]  VWA9 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIVWA9 [Mapview hg19]  VWA9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA745705 AK027475 AK293207 AK296134 AK301033
RefSeq transcript (Entrez)NM_001136043 NM_001207058 NM_001207059 NM_030800
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)VWA9
Cluster EST : UnigeneHs.6686 [ NCBI ]
CGAP (NCI)Hs.6686
Alternative Splicing GalleryENSG00000138614
Gene ExpressionVWA9 [ NCBI-GEO ]   VWA9 [ EBI - ARRAY_EXPRESS ]   VWA9 [ SEEK ]   VWA9 [ MEM ]
Gene Expression Viewer (FireBrowse)VWA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81556
GTEX Portal (Tissue expression)VWA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SY0
Splice isoforms : SwissVarQ96SY0
PhosPhoSitePlusQ96SY0
Domains : Interpro (EBI)VWF_A   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)VWA (SM00327)  
Conserved Domain (NCBI)VWA9
DMDM Disease mutations81556
Blocks (Seattle)VWA9
SuperfamilyQ96SY0
Human Protein AtlasENSG00000138614
Peptide AtlasQ96SY0
HPRD13175
IPIIPI00854811   IPI01018820   IPI00306017   IPI00914573   IPI00910192   IPI00984960   
Protein Interaction databases
DIP (DOE-UCLA)Q96SY0
IntAct (EBI)Q96SY0
FunCoupENSG00000138614
BioGRIDVWA9
STRING (EMBL)VWA9
ZODIACVWA9
Ontologies - Pathways
QuickGOQ96SY0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkVWA9
Atlas of Cancer Signalling NetworkVWA9
Wikipedia pathwaysVWA9
Orthology - Evolution
OrthoDB81556
GeneTree (enSembl)ENSG00000138614
Phylogenetic Trees/Animal Genes : TreeFamVWA9
HOVERGENQ96SY0
HOGENOMQ96SY0
Homologs : HomoloGeneVWA9
Homology/Alignments : Family Browser (UCSC)VWA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVWA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VWA9
dbVarVWA9
ClinVarVWA9
1000_GenomesVWA9 
Exome Variant ServerVWA9
ExAC (Exome Aggregation Consortium)VWA9 (select the gene name)
Genetic variants : HAPMAP81556
Genomic Variants (DGV)VWA9 [DGVbeta]
DECIPHER (Syndromes)15:65871096-65903627  ENSG00000138614
CONAN: Copy Number AnalysisVWA9 
Mutations
ICGC Data PortalVWA9 
TCGA Data PortalVWA9 
Broad Tumor PortalVWA9
OASIS PortalVWA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVWA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVWA9
BioMutasearch VWA9
DgiDB (Drug Gene Interaction Database)VWA9
DoCM (Curated mutations)VWA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VWA9 (select a term)
intoGenVWA9
Cancer3DVWA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVWA9
Genetic Testing Registry VWA9
NextProtQ96SY0 [Medical]
TSGene81556
GENETestsVWA9
Huge Navigator VWA9 [HugePedia]
snp3D : Map Gene to Disease81556
BioCentury BCIQVWA9
ClinGenVWA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81556
Chemical/Pharm GKB GenePA142672279
Clinical trialVWA9
Miscellaneous
canSAR (ICR)VWA9 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVWA9
EVEXVWA9
GoPubMedVWA9
iHOPVWA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:26 CET 2017

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