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VWDE (von Willebrand factor D and EGF domains)

Identity

Alias_symbol (synonym)FLJ14712
Other alias-
HGNC (Hugo) VWDE
LocusID (NCBI) 221806
Atlas_Id 75673
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 12370509 and ends at 12443852 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VWDE   21897
Cards
Entrez_Gene (NCBI)VWDE  221806  von Willebrand factor D and EGF domains
Aliases
GeneCards (Weizmann)VWDE
Ensembl hg19 (Hinxton)ENSG00000146530 [Gene_View]  chr7:12370509-12443852 [Contig_View]  VWDE [Vega]
Ensembl hg38 (Hinxton)ENSG00000146530 [Gene_View]  chr7:12370509-12443852 [Contig_View]  VWDE [Vega]
ICGC DataPortalENSG00000146530
TCGA cBioPortalVWDE
AceView (NCBI)VWDE
Genatlas (Paris)VWDE
WikiGenes221806
SOURCE (Princeton)VWDE
Genetics Home Reference (NIH)VWDE
Genomic and cartography
GoldenPath hg19 (UCSC)VWDE  -     chr7:12370509-12443852 -  7p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VWDE  -     7p21.3   [Description]    (hg38-Dec_2013)
EnsemblVWDE - 7p21.3 [CytoView hg19]  VWDE - 7p21.3 [CytoView hg38]
Mapping of homologs : NCBIVWDE [Mapview hg19]  VWDE [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027618 AK075525 BC144316 BC144319
RefSeq transcript (Entrez)NM_001135924
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)VWDE
Cluster EST : UnigeneHs.669526 [ NCBI ]
CGAP (NCI)Hs.669526
Alternative Splicing GalleryENSG00000146530
Gene ExpressionVWDE [ NCBI-GEO ]   VWDE [ EBI - ARRAY_EXPRESS ]   VWDE [ SEEK ]   VWDE [ MEM ]
Gene Expression Viewer (FireBrowse)VWDE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221806
GTEX Portal (Tissue expression)VWDE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2E2
Splice isoforms : SwissVarQ8N2E2
PhosPhoSitePlusQ8N2E2
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    VWFD (PS51233)   
Domains : Interpro (EBI)EG-like_dom    EGF-like_CS    VWF_type-D   
Domain families : Pfam (Sanger)hEGF (PF12661)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam12661    pfam00094   
Domain families : Smart (EMBL)EGF (SM00181)  VWD (SM00216)  
Conserved Domain (NCBI)VWDE
DMDM Disease mutations221806
Blocks (Seattle)VWDE
SuperfamilyQ8N2E2
Human Protein AtlasENSG00000146530
Peptide AtlasQ8N2E2
IPIIPI00893951   IPI01012591   IPI00166386   IPI00981959   IPI00973316   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2E2
IntAct (EBI)Q8N2E2
FunCoupENSG00000146530
BioGRIDVWDE
STRING (EMBL)VWDE
ZODIACVWDE
Ontologies - Pathways
QuickGOQ8N2E2
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkVWDE
Atlas of Cancer Signalling NetworkVWDE
Wikipedia pathwaysVWDE
Orthology - Evolution
OrthoDB221806
GeneTree (enSembl)ENSG00000146530
Phylogenetic Trees/Animal Genes : TreeFamVWDE
HOVERGENQ8N2E2
HOGENOMQ8N2E2
Homologs : HomoloGeneVWDE
Homology/Alignments : Family Browser (UCSC)VWDE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVWDE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VWDE
dbVarVWDE
ClinVarVWDE
1000_GenomesVWDE 
Exome Variant ServerVWDE
ExAC (Exome Aggregation Consortium)VWDE (select the gene name)
Genetic variants : HAPMAP221806
Genomic Variants (DGV)VWDE [DGVbeta]
DECIPHER (Syndromes)7:12370509-12443852  ENSG00000146530
CONAN: Copy Number AnalysisVWDE 
Mutations
ICGC Data PortalVWDE 
TCGA Data PortalVWDE 
Broad Tumor PortalVWDE
OASIS PortalVWDE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVWDE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVWDE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VWDE
DgiDB (Drug Gene Interaction Database)VWDE
DoCM (Curated mutations)VWDE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VWDE (select a term)
intoGenVWDE
Cancer3DVWDE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVWDE
Genetic Testing Registry VWDE
NextProtQ8N2E2 [Medical]
TSGene221806
GENETestsVWDE
Huge Navigator VWDE [HugePedia]
snp3D : Map Gene to Disease221806
BioCentury BCIQVWDE
ClinGenVWDE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221806
Chemical/Pharm GKB GenePA164727503
Clinical trialVWDE
Miscellaneous
canSAR (ICR)VWDE (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVWDE
EVEXVWDE
GoPubMedVWDE
iHOPVWDE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:27 CET 2017

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