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WASF3 (WAS protein family member 3)

Identity

Alias_namesWAS protein family
Alias_symbol (synonym)WAVE3
SCAR3
KIAA0900
Other aliasBrush-1
HGNC (Hugo) WASF3
LocusID (NCBI) 10810
Atlas_Id 42802
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 26557703 and ends at 26688946 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IFT88 (13q12.11) / WASF3 (13q12.13)KATNAL1 (13q12.3) / WASF3 (13q12.13)WASF3 (13q12.13) / XRN2 (20p11.23)
IFT88 13q12.11 / WASF3 13q12.13KATNAL1 13q12.3 / WASF3 13q12.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WASF3   12734
Cards
Entrez_Gene (NCBI)WASF3  10810  WAS protein family member 3
AliasesBrush-1; SCAR3; WAVE3
GeneCards (Weizmann)WASF3
Ensembl hg19 (Hinxton)ENSG00000132970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132970 [Gene_View]  chr13:26557703-26688946 [Contig_View]  WASF3 [Vega]
ICGC DataPortalENSG00000132970
TCGA cBioPortalWASF3
AceView (NCBI)WASF3
Genatlas (Paris)WASF3
WikiGenes10810
SOURCE (Princeton)WASF3
Genetics Home Reference (NIH)WASF3
Genomic and cartography
GoldenPath hg38 (UCSC)WASF3  -     chr13:26557703-26688946 +  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WASF3  -     13q12.13   [Description]    (hg19-Feb_2009)
EnsemblWASF3 - 13q12.13 [CytoView hg19]  WASF3 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBIWASF3 [Mapview hg19]  WASF3 [Mapview hg38]
OMIM605068   
Gene and transcription
Genbank (Entrez)AB020707 AB026543 AF134305 AF454702 AK289845
RefSeq transcript (Entrez)NM_001291965 NM_006646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WASF3
Cluster EST : UnigeneHs.618732 [ NCBI ]
CGAP (NCI)Hs.618732
Alternative Splicing GalleryENSG00000132970
Gene ExpressionWASF3 [ NCBI-GEO ]   WASF3 [ EBI - ARRAY_EXPRESS ]   WASF3 [ SEEK ]   WASF3 [ MEM ]
Gene Expression Viewer (FireBrowse)WASF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10810
GTEX Portal (Tissue expression)WASF3
Human Protein AtlasENSG00000132970-WASF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPY6
Splice isoforms : SwissVarQ9UPY6
PhosPhoSitePlusQ9UPY6
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)SCAR/WAVE_fam    WH2_dom   
Domain families : Pfam (Sanger)WH2 (PF02205)   
Domain families : Pfam (NCBI)pfam02205   
Domain families : Smart (EMBL)WH2 (SM00246)  
Conserved Domain (NCBI)WASF3
DMDM Disease mutations10810
Blocks (Seattle)WASF3
SuperfamilyQ9UPY6
Human Protein Atlas [tissue]ENSG00000132970-WASF3 [tissue]
Peptide AtlasQ9UPY6
HPRD05458
IPIIPI00299003   IPI00384347   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPY6
IntAct (EBI)Q9UPY6
FunCoupENSG00000132970
BioGRIDWASF3
STRING (EMBL)WASF3
ZODIACWASF3
Ontologies - Pathways
QuickGOQ9UPY6
Ontology : AmiGOactin binding  cytoplasm  cytoskeleton  protein complex assembly  cytoskeleton organization  regulation of cell shape  oligodendrocyte development  lamellipodium  lamellipodium assembly  actin filament polymerization  positive regulation of myelination  extracellular exosome  
Ontology : EGO-EBIactin binding  cytoplasm  cytoskeleton  protein complex assembly  cytoskeleton organization  regulation of cell shape  oligodendrocyte development  lamellipodium  lamellipodium assembly  actin filament polymerization  positive regulation of myelination  extracellular exosome  
Pathways : BIOCARTAY branching of actin filaments [Genes]   
Pathways : KEGGAdherens junction    Fc gamma R-mediated phagocytosis   
NDEx NetworkWASF3
Atlas of Cancer Signalling NetworkWASF3
Wikipedia pathwaysWASF3
Orthology - Evolution
OrthoDB10810
GeneTree (enSembl)ENSG00000132970
Phylogenetic Trees/Animal Genes : TreeFamWASF3
HOVERGENQ9UPY6
HOGENOMQ9UPY6
Homologs : HomoloGeneWASF3
Homology/Alignments : Family Browser (UCSC)WASF3
Gene fusions - Rearrangements
Fusion : MitelmanIFT88/WASF3 [13q12.11/13q12.13]  [t(13;13)(q12;q12)]  
Fusion : MitelmanKATNAL1/WASF3 [13q12.3/13q12.13]  [t(13;13)(q12;q12)]  
Fusion: TCGA_MDACCIFT88 13q12.11 WASF3 13q12.13 BRCA
Fusion: TCGA_MDACCKATNAL1 13q12.3 WASF3 13q12.13 BRCA
Tumor Fusion PortalWASF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASF3
dbVarWASF3
ClinVarWASF3
1000_GenomesWASF3 
Exome Variant ServerWASF3
ExAC (Exome Aggregation Consortium)ENSG00000132970
GNOMAD BrowserENSG00000132970
Genetic variants : HAPMAP10810
Genomic Variants (DGV)WASF3 [DGVbeta]
DECIPHERWASF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWASF3 
Mutations
ICGC Data PortalWASF3 
TCGA Data PortalWASF3 
Broad Tumor PortalWASF3
OASIS PortalWASF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWASF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWASF3
intOGen PortalWASF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WASF3
DgiDB (Drug Gene Interaction Database)WASF3
DoCM (Curated mutations)WASF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASF3 (select a term)
intoGenWASF3
Cancer3DWASF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605068   
Orphanet
DisGeNETWASF3
MedgenWASF3
Genetic Testing Registry WASF3
NextProtQ9UPY6 [Medical]
TSGene10810
GENETestsWASF3
Target ValidationWASF3
Huge Navigator WASF3 [HugePedia]
snp3D : Map Gene to Disease10810
BioCentury BCIQWASF3
ClinGenWASF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10810
Chemical/Pharm GKB GenePA37345
Clinical trialWASF3
Miscellaneous
canSAR (ICR)WASF3 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASF3
EVEXWASF3
GoPubMedWASF3
iHOPWASF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 21:06:09 CET 2017

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