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WASH1 (WAS protein family homolog 1)

Identity

Alias_namesFAM39E
family with sequence similarity 39, member E
Alias_symbol (synonym)FLJ00038
Other aliasWASH
HGNC (Hugo) WASH1
LocusID (NCBI) 100287171
Atlas_Id 75676
Location 9p24.3  [Link to chromosome band 9p24]
Location_base_pair Starts at 14511 and ends at 29739 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
WASH1 (9p24.3) / DEFB125 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WASH1   24361
Cards
Entrez_Gene (NCBI)WASH1  100287171  WAS protein family homolog 1
AliasesFAM39E; WASH
GeneCards (Weizmann)WASH1
Ensembl hg19 (Hinxton)ENSG00000181404 [Gene_View]  chr9:14511-29739 [Contig_View]  WASH1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181404 [Gene_View]  chr9:14511-29739 [Contig_View]  WASH1 [Vega]
ICGC DataPortalENSG00000181404
TCGA cBioPortalWASH1
AceView (NCBI)WASH1
Genatlas (Paris)WASH1
WikiGenes100287171
SOURCE (Princeton)WASH1
Genetics Home Reference (NIH)WASH1
Genomic and cartography
GoldenPath hg19 (UCSC)WASH1  -     chr9:14511-29739 -  9p24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WASH1  -     9p24.3   [Description]    (hg38-Dec_2013)
EnsemblWASH1 - 9p24.3 [CytoView hg19]  WASH1 - 9p24.3 [CytoView hg38]
Mapping of homologs : NCBIWASH1 [Mapview hg19]  WASH1 [Mapview hg38]
OMIM613632   
Gene and transcription
Genbank (Entrez)AK024448 AK024481 AK289708 AK309568 BC014406
RefSeq transcript (Entrez)NM_182905
RefSeq genomic (Entrez)NC_000009 NC_018934 NT_008413 NW_004929448
Consensus coding sequences : CCDS (NCBI)WASH1
Cluster EST : UnigeneHs.709408 [ NCBI ]
CGAP (NCI)Hs.709408
Alternative Splicing GalleryENSG00000181404
Gene ExpressionWASH1 [ NCBI-GEO ]   WASH1 [ EBI - ARRAY_EXPRESS ]   WASH1 [ SEEK ]   WASH1 [ MEM ]
Gene Expression Viewer (FireBrowse)WASH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287171
GTEX Portal (Tissue expression)WASH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K0Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K0Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K0Z3
Splice isoforms : SwissVarA8K0Z3
PhosPhoSitePlusA8K0Z3
Domains : Interpro (EBI)WASH1    WASH1_WAHD   
Domain families : Pfam (Sanger)WASH_WAHD (PF11945)   
Domain families : Pfam (NCBI)pfam11945   
Conserved Domain (NCBI)WASH1
DMDM Disease mutations100287171
Blocks (Seattle)WASH1
SuperfamilyA8K0Z3
Human Protein AtlasENSG00000181404
Peptide AtlasA8K0Z3
IPIIPI00954866   IPI01012444   IPI00017695   
Protein Interaction databases
DIP (DOE-UCLA)A8K0Z3
IntAct (EBI)A8K0Z3
FunCoupENSG00000181404
BioGRIDWASH1
STRING (EMBL)WASH1
ZODIACWASH1
Ontologies - Pathways
QuickGOA8K0Z3
Ontology : AmiGOexocyst  actin binding  protein binding  early endosome  early endosome  late endosome  autophagosome  centriole  exocytosis  protein transport  endosomal transport  extracellular matrix disassembly  positive regulation of cell migration  positive regulation of pseudopodium assembly  cytoplasmic vesicle  ubiquitin protein ligase binding  early endosome membrane  Arp2/3 complex-mediated actin nucleation  Arp2/3 complex-mediated actin nucleation  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  alpha-tubulin binding  recycling endosome  recycling endosome membrane  WASH complex  invadopodium  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIexocyst  actin binding  protein binding  early endosome  early endosome  late endosome  autophagosome  centriole  exocytosis  protein transport  endosomal transport  extracellular matrix disassembly  positive regulation of cell migration  positive regulation of pseudopodium assembly  cytoplasmic vesicle  ubiquitin protein ligase binding  early endosome membrane  Arp2/3 complex-mediated actin nucleation  Arp2/3 complex-mediated actin nucleation  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  alpha-tubulin binding  recycling endosome  recycling endosome membrane  WASH complex  invadopodium  retrograde transport, endosome to plasma membrane  
NDEx NetworkWASH1
Atlas of Cancer Signalling NetworkWASH1
Wikipedia pathwaysWASH1
Orthology - Evolution
OrthoDB100287171
GeneTree (enSembl)ENSG00000181404
Phylogenetic Trees/Animal Genes : TreeFamWASH1
HOVERGENA8K0Z3
HOGENOMA8K0Z3
Homologs : HomoloGeneWASH1
Homology/Alignments : Family Browser (UCSC)WASH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASH1
dbVarWASH1
ClinVarWASH1
1000_GenomesWASH1 
Exome Variant ServerWASH1
ExAC (Exome Aggregation Consortium)WASH1 (select the gene name)
Genetic variants : HAPMAP100287171
Genomic Variants (DGV)WASH1 [DGVbeta]
DECIPHER (Syndromes)9:14511-29739  ENSG00000181404
CONAN: Copy Number AnalysisWASH1 
Mutations
ICGC Data PortalWASH1 
TCGA Data PortalWASH1 
Broad Tumor PortalWASH1
OASIS PortalWASH1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WASH1
DgiDB (Drug Gene Interaction Database)WASH1
DoCM (Curated mutations)WASH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASH1 (select a term)
intoGenWASH1
Cancer3DWASH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613632   
Orphanet
MedgenWASH1
Genetic Testing Registry WASH1
NextProtA8K0Z3 [Medical]
TSGene100287171
GENETestsWASH1
Huge Navigator WASH1 [HugePedia]
snp3D : Map Gene to Disease100287171
BioCentury BCIQWASH1
ClinGenWASH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287171
Chemical/Pharm GKB GenePA162409121
Clinical trialWASH1
Miscellaneous
canSAR (ICR)WASH1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASH1
EVEXWASH1
GoPubMedWASH1
iHOPWASH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:27 CET 2017

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