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WASH2P (WAS protein family homolog 2 pseudogene)

Identity

Alias_namesFAM39B
family with sequence similarity 39
Alias_symbol (synonym)MGC52000
Other alias
HGNC (Hugo) WASH2P
LocusID (NCBI) 375260
Atlas_Id 54772
Location Yq12  [Link to chromosome band Yq12]
Location_base_pair Starts at 57208210 and ends at 57212031 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WASH2P   33145
Cards
Entrez_Gene (NCBI)WASH2P  375260  WAS protein family homolog 2 pseudogene
AliasesFAM39B
GeneCards (Weizmann)WASH2P
Ensembl hg19 (Hinxton)ENSG00000146556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146556 [Gene_View]  chrY:57208210-57212031 [Contig_View]  WASH2P [Vega]
ICGC DataPortalENSG00000146556
TCGA cBioPortalWASH2P
AceView (NCBI)WASH2P
Genatlas (Paris)WASH2P
WikiGenes375260
SOURCE (Princeton)WASH2P
Genetics Home Reference (NIH)WASH2P
Genomic and cartography
GoldenPath hg38 (UCSC)WASH2P  -     chrY:57208210-57212031 +  Yq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WASH2P  -     Yq12   [Description]    (hg19-Feb_2009)
EnsemblWASH2P - Yq12 [CytoView hg19]  WASH2P - Yq12 [CytoView hg38]
Mapping of homologs : NCBIWASH2P [Mapview hg19]  WASH2P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292759 AK308574 AL137714 AY217347 AY341936
RefSeq transcript (Entrez)NM_198943
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WASH2P
Cluster EST : UnigeneHs.709408 [ NCBI ]
CGAP (NCI)Hs.709408
Alternative Splicing GalleryENSG00000146556
Gene ExpressionWASH2P [ NCBI-GEO ]   WASH2P [ EBI - ARRAY_EXPRESS ]   WASH2P [ SEEK ]   WASH2P [ MEM ]
Gene Expression Viewer (FireBrowse)WASH2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375260
GTEX Portal (Tissue expression)WASH2P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6VEQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6VEQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6VEQ5
Splice isoforms : SwissVarQ6VEQ5
PhosPhoSitePlusQ6VEQ5
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)WASH1    WASH1_WAHD    WH2_dom   
Domain families : Pfam (Sanger)WASH_WAHD (PF11945)   
Domain families : Pfam (NCBI)pfam11945   
Conserved Domain (NCBI)WASH2P
DMDM Disease mutations375260
Blocks (Seattle)WASH2P
SuperfamilyQ6VEQ5
Human Protein AtlasENSG00000146556
Peptide AtlasQ6VEQ5
HPRD17562
IPIIPI00816476   IPI00942821   IPI00746867   
Protein Interaction databases
DIP (DOE-UCLA)Q6VEQ5
IntAct (EBI)Q6VEQ5
FunCoupENSG00000146556
BioGRIDWASH2P
STRING (EMBL)WASH2P
ZODIACWASH2P
Ontologies - Pathways
QuickGOQ6VEQ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkWASH2P
Atlas of Cancer Signalling NetworkWASH2P
Wikipedia pathwaysWASH2P
Orthology - Evolution
OrthoDB375260
GeneTree (enSembl)ENSG00000146556
Phylogenetic Trees/Animal Genes : TreeFamWASH2P
HOVERGENQ6VEQ5
HOGENOMQ6VEQ5
Homologs : HomoloGeneWASH2P
Homology/Alignments : Family Browser (UCSC)WASH2P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASH2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASH2P
dbVarWASH2P
ClinVarWASH2P
1000_GenomesWASH2P 
Exome Variant ServerWASH2P
ExAC (Exome Aggregation Consortium)WASH2P (select the gene name)
Genetic variants : HAPMAP375260
Genomic Variants (DGV)WASH2P [DGVbeta]
DECIPHERWASH2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWASH2P 
Mutations
ICGC Data PortalWASH2P 
TCGA Data PortalWASH2P 
Broad Tumor PortalWASH2P
OASIS PortalWASH2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASH2P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WASH2P
DgiDB (Drug Gene Interaction Database)WASH2P
DoCM (Curated mutations)WASH2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASH2P (select a term)
intoGenWASH2P
Cancer3DWASH2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWASH2P
Genetic Testing Registry WASH2P
NextProtQ6VEQ5 [Medical]
TSGene375260
GENETestsWASH2P
Target ValidationWASH2P
Huge Navigator WASH2P [HugePedia]
snp3D : Map Gene to Disease375260
BioCentury BCIQWASH2P
ClinGenWASH2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375260
Clinical trialWASH2P
Miscellaneous
canSAR (ICR)WASH2P (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASH2P
EVEXWASH2P
GoPubMedWASH2P
iHOPWASH2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:42 CEST 2017

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