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WASH3P (WAS protein family homolog 3 pseudogene)

Identity

Alias_namesFAM39DP
family with sequence similarity 39, member D pseudogene
Alias_symbol (synonym)FLJ25222
Other alias
HGNC (Hugo) WASH3P
LocusID (NCBI) 374666
Atlas_Id 75677
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 102501165 and ends at 102516763 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)WASH3P   24362
Cards
Entrez_Gene (NCBI)WASH3P  374666  WAS protein family homolog 3 pseudogene
AliasesFAM39DP
GeneCards (Weizmann)WASH3P
Ensembl hg19 (Hinxton) [Gene_View]  chr15:102501165-102516763 [Contig_View]  WASH3P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:102501165-102516763 [Contig_View]  WASH3P [Vega]
TCGA cBioPortalWASH3P
AceView (NCBI)WASH3P
Genatlas (Paris)WASH3P
WikiGenes374666
SOURCE (Princeton)WASH3P
Genetics Home Reference (NIH)WASH3P
Genomic and cartography
GoldenPath hg19 (UCSC)WASH3P  -     chr15:102501165-102516763 +  15q26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WASH3P  -     15q26.3   [Description]    (hg38-Dec_2013)
EnsemblWASH3P - 15q26.3 [CytoView hg19]  WASH3P - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBIWASH3P [Mapview hg19]  WASH3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056232 AK057951 AK095183 AK097269 AK290087
RefSeq transcript (Entrez)NM_199163
RefSeq genomic (Entrez)NC_000015 NT_010194
Consensus coding sequences : CCDS (NCBI)WASH3P
Cluster EST : UnigeneHs.585931 [ NCBI ]
CGAP (NCI)Hs.585931
Gene ExpressionWASH3P [ NCBI-GEO ]   WASH3P [ EBI - ARRAY_EXPRESS ]   WASH3P [ SEEK ]   WASH3P [ MEM ]
Gene Expression Viewer (FireBrowse)WASH3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374666
GTEX Portal (Tissue expression)WASH3P
Protein : pattern, domain, 3D structure
UniProt/SwissProtC4AMC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC4AMC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC4AMC7
Splice isoforms : SwissVarC4AMC7
PhosPhoSitePlusC4AMC7
Domaine pattern : Prosite (Expaxy)WH2 (PS51082)   
Domains : Interpro (EBI)WASH1    WASH1_WAHD    WH2_dom   
Domain families : Pfam (Sanger)WASH_WAHD (PF11945)   
Domain families : Pfam (NCBI)pfam11945   
Conserved Domain (NCBI)WASH3P
DMDM Disease mutations374666
Blocks (Seattle)WASH3P
SuperfamilyC4AMC7
Peptide AtlasC4AMC7
HPRD16921
IPIIPI00815683   
Protein Interaction databases
DIP (DOE-UCLA)C4AMC7
IntAct (EBI)C4AMC7
BioGRIDWASH3P
STRING (EMBL)WASH3P
ZODIACWASH3P
Ontologies - Pathways
QuickGOC4AMC7
Ontology : AmiGOactin binding  early endosome  early endosome  autophagosome  centriole  protein targeting to lysosome  endosome organization  endosomal transport  lamellipodium  filopodium  cytoplasmic vesicle  early endosome membrane  Arp2/3 complex-mediated actin nucleation  retrograde transport, endosome to Golgi  alpha-tubulin binding  early endosome to late endosome transport  recycling endosome  recycling endosome  recycling endosome membrane  WASH complex  
Ontology : EGO-EBIactin binding  early endosome  early endosome  autophagosome  centriole  protein targeting to lysosome  endosome organization  endosomal transport  lamellipodium  filopodium  cytoplasmic vesicle  early endosome membrane  Arp2/3 complex-mediated actin nucleation  retrograde transport, endosome to Golgi  alpha-tubulin binding  early endosome to late endosome transport  recycling endosome  recycling endosome  recycling endosome membrane  WASH complex  
NDEx NetworkWASH3P
Atlas of Cancer Signalling NetworkWASH3P
Wikipedia pathwaysWASH3P
Orthology - Evolution
OrthoDB374666
Phylogenetic Trees/Animal Genes : TreeFamWASH3P
HOVERGENC4AMC7
HOGENOMC4AMC7
Homologs : HomoloGeneWASH3P
Homology/Alignments : Family Browser (UCSC)WASH3P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASH3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASH3P
dbVarWASH3P
ClinVarWASH3P
1000_GenomesWASH3P 
Exome Variant ServerWASH3P
ExAC (Exome Aggregation Consortium)WASH3P (select the gene name)
Genetic variants : HAPMAP374666
Genomic Variants (DGV)WASH3P [DGVbeta]
DECIPHER (Syndromes)15:102501165-102516763  
CONAN: Copy Number AnalysisWASH3P 
Mutations
ICGC Data PortalWASH3P 
TCGA Data PortalWASH3P 
Broad Tumor PortalWASH3P
OASIS PortalWASH3P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWASH3P  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDWASH3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WASH3P
DgiDB (Drug Gene Interaction Database)WASH3P
DoCM (Curated mutations)WASH3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASH3P (select a term)
intoGenWASH3P
Cancer3DWASH3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWASH3P
Genetic Testing Registry WASH3P
NextProtC4AMC7 [Medical]
TSGene374666
GENETestsWASH3P
Huge Navigator WASH3P [HugePedia]
snp3D : Map Gene to Disease374666
BioCentury BCIQWASH3P
ClinGenWASH3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374666
Clinical trialWASH3P
Miscellaneous
canSAR (ICR)WASH3P (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASH3P
EVEXWASH3P
GoPubMedWASH3P
iHOPWASH3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:28 CET 2017

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