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WASH6P (WAS protein family homolog 6 pseudogene)

Identity

Alias_namesFAM39A
CXYorf1
family with sequence similarity 39, member A
chromosomes X and Y open reading frame 1
Other aliasWASH
HGNC (Hugo) WASH6P
LocusID (NCBI) 653440
Atlas_Id 75679
Location Yq12  [Link to chromosome band Yq12]
Location_base_pair Starts at 59356038 and ends at 59358336 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)WASH6P   31685
Cards
Entrez_Gene (NCBI)WASH6P  653440  WAS protein family homolog 6 pseudogene
AliasesCXYorf1; FAM39A; WASH
GeneCards (Weizmann)WASH6P
Ensembl hg19 (Hinxton) [Gene_View]  chrY:59356038-59358336 [Contig_View]  WASH6P [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrY:59356038-59358336 [Contig_View]  WASH6P [Vega]
TCGA cBioPortalWASH6P
AceView (NCBI)WASH6P
Genatlas (Paris)WASH6P
WikiGenes653440
SOURCE (Princeton)WASH6P
Genetics Home Reference (NIH)WASH6P
Genomic and cartography
GoldenPath hg19 (UCSC)WASH6P  -     chrY:59356038-59358336 +  Yq12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)WASH6P  -     Yq12   [Description]    (hg38-Dec_2013)
EnsemblWASH6P - Yq12 [CytoView hg19]  WASH6P - Yq12 [CytoView hg38]
Mapping of homologs : NCBIWASH6P [Mapview hg19]  WASH6P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029274
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_000024 NG_008380 NT_011681 NT_167206
Consensus coding sequences : CCDS (NCBI)WASH6P
Gene ExpressionWASH6P [ NCBI-GEO ]   WASH6P [ EBI - ARRAY_EXPRESS ]   WASH6P [ SEEK ]   WASH6P [ MEM ]
Gene Expression Viewer (FireBrowse)WASH6P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653440
GTEX Portal (Tissue expression)WASH6P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQA3
Splice isoforms : SwissVarQ9NQA3
PhosPhoSitePlusQ9NQA3
Domains : Interpro (EBI)WASH1    WASH1_WAHD   
Domain families : Pfam (Sanger)WASH_WAHD (PF11945)   
Domain families : Pfam (NCBI)pfam11945   
Conserved Domain (NCBI)WASH6P
DMDM Disease mutations653440
Blocks (Seattle)WASH6P
SuperfamilyQ9NQA3
Peptide AtlasQ9NQA3
HPRD16814
Protein Interaction databases
DIP (DOE-UCLA)Q9NQA3
IntAct (EBI)Q9NQA3
BioGRIDWASH6P
STRING (EMBL)WASH6P
ZODIACWASH6P
Ontologies - Pathways
QuickGOQ9NQA3
Ontology : AmiGOmolecular_function  actin binding  early endosome  biological_process  endosomal transport  early endosome membrane  Arp2/3 complex-mediated actin nucleation  retrograde transport, endosome to Golgi  alpha-tubulin binding  recycling endosome  recycling endosome membrane  WASH complex  
Ontology : EGO-EBImolecular_function  actin binding  early endosome  biological_process  endosomal transport  early endosome membrane  Arp2/3 complex-mediated actin nucleation  retrograde transport, endosome to Golgi  alpha-tubulin binding  recycling endosome  recycling endosome membrane  WASH complex  
NDEx NetworkWASH6P
Atlas of Cancer Signalling NetworkWASH6P
Wikipedia pathwaysWASH6P
Orthology - Evolution
OrthoDB653440
Phylogenetic Trees/Animal Genes : TreeFamWASH6P
HOVERGENQ9NQA3
HOGENOMQ9NQA3
Homologs : HomoloGeneWASH6P
Homology/Alignments : Family Browser (UCSC)WASH6P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASH6P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASH6P
dbVarWASH6P
ClinVarWASH6P
1000_GenomesWASH6P 
Exome Variant ServerWASH6P
ExAC (Exome Aggregation Consortium)WASH6P (select the gene name)
Genetic variants : HAPMAP653440
Genomic Variants (DGV)WASH6P [DGVbeta]
DECIPHER (Syndromes)Y:59356038-59358336  
CONAN: Copy Number AnalysisWASH6P 
Mutations
ICGC Data PortalWASH6P 
TCGA Data PortalWASH6P 
Broad Tumor PortalWASH6P
OASIS PortalWASH6P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASH6P
BioMutasearch WASH6P
DgiDB (Drug Gene Interaction Database)WASH6P
DoCM (Curated mutations)WASH6P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASH6P (select a term)
intoGenWASH6P
Cancer3DWASH6P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenWASH6P
Genetic Testing Registry WASH6P
NextProtQ9NQA3 [Medical]
TSGene653440
GENETestsWASH6P
Huge Navigator WASH6P [HugePedia]
snp3D : Map Gene to Disease653440
BioCentury BCIQWASH6P
ClinGenWASH6P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653440
Chemical/Pharm GKB GenePA142671893
Clinical trialWASH6P
Miscellaneous
canSAR (ICR)WASH6P (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASH6P
EVEXWASH6P
GoPubMedWASH6P
iHOPWASH6P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:28 CET 2017

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