Atlas of Genetics and Cytogenetics in Oncology and Haematology

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WASHC2A (WASH complex subunit 2A)

Identity

Other aliasFAM21A
FAM21B
bA56A21.1
bA98I6.1
HGNC (Hugo) WASHC2A
LocusID (NCBI) 387680
Atlas_Id 78667
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50067888 and ends at 50133509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WASHC2A   23416
Cards
Entrez_Gene (NCBI)WASHC2A  387680  WASH complex subunit 2A
AliasesFAM21A; FAM21B; bA56A21.1; bA98I6.1
GeneCards (Weizmann)WASHC2A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:50067888-50133509 [Contig_View]  WASHC2A [Vega]
TCGA cBioPortalWASHC2A
AceView (NCBI)WASHC2A
Genatlas (Paris)WASHC2A
WikiGenes387680
SOURCE (Princeton)WASHC2A
Genetics Home Reference (NIH)WASHC2A
Genomic and cartography
GoldenPath hg38 (UCSC)WASHC2A  -     chr10:50067888-50133509 +  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WASHC2A  -     10q11.23   [Description]    (hg19-Feb_2009)
EnsemblWASHC2A - 10q11.23 [CytoView hg19]  WASHC2A - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIWASHC2A [Mapview hg19]  WASHC2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA147749 AK001686 AK055424 AK125147 AK295129
RefSeq transcript (Entrez)NM_001005751 NM_001291398 NM_001330102 NM_018232
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WASHC2A
Cluster EST : UnigeneHs.645272 [ NCBI ]
CGAP (NCI)Hs.645272
Gene ExpressionWASHC2A [ NCBI-GEO ]   WASHC2A [ EBI - ARRAY_EXPRESS ]   WASHC2A [ SEEK ]   WASHC2A [ MEM ]
Gene Expression Viewer (FireBrowse)WASHC2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387680
GTEX Portal (Tissue expression)WASHC2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ641Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ641Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ641Q2
Splice isoforms : SwissVarQ641Q2
PhosPhoSitePlusQ641Q2
Domains : Interpro (EBI)FAM21    FAM21/CAPZIP   
Domain families : Pfam (Sanger)CAP-ZIP_m (PF15255)   
Domain families : Pfam (NCBI)pfam15255   
Conserved Domain (NCBI)WASHC2A
DMDM Disease mutations387680
Blocks (Seattle)WASHC2A
SuperfamilyQ641Q2
Peptide AtlasQ641Q2
HPRD17364
IPIIPI00792422   IPI01012041   IPI00936037   IPI00294810   IPI00470523   IPI00941002   
Protein Interaction databases
DIP (DOE-UCLA)Q641Q2
IntAct (EBI)Q641Q2
BioGRIDWASHC2A
STRING (EMBL)WASHC2A
ZODIACWASHC2A
Ontologies - Pathways
QuickGOQ641Q2
Ontology : AmiGOnucleolus  early endosome  cytosol  plasma membrane  lipid binding  protein transport  early endosome membrane  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  WASH complex  
Ontology : EGO-EBInucleolus  early endosome  cytosol  plasma membrane  lipid binding  protein transport  early endosome membrane  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  WASH complex  
NDEx NetworkWASHC2A
Atlas of Cancer Signalling NetworkWASHC2A
Wikipedia pathwaysWASHC2A
Orthology - Evolution
OrthoDB387680
Phylogenetic Trees/Animal Genes : TreeFamWASHC2A
HOVERGENQ641Q2
HOGENOMQ641Q2
Homologs : HomoloGeneWASHC2A
Homology/Alignments : Family Browser (UCSC)WASHC2A
Gene fusions - Rearrangements
Fusion : QuiverWASHC2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASHC2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASHC2A
dbVarWASHC2A
ClinVarWASHC2A
1000_GenomesWASHC2A 
Exome Variant ServerWASHC2A
Varsome BrowserWASHC2A
Genetic variants : HAPMAP387680
Genomic Variants (DGV)WASHC2A [DGVbeta]
DECIPHERWASHC2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWASHC2A 
Mutations
ICGC Data PortalWASHC2A 
TCGA Data PortalWASHC2A 
Broad Tumor PortalWASHC2A
OASIS PortalWASHC2A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWASHC2A
BioMutasearch WASHC2A
DgiDB (Drug Gene Interaction Database)WASHC2A
DoCM (Curated mutations)WASHC2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WASHC2A (select a term)
intoGenWASHC2A
Cancer3DWASHC2A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWASHC2A
MedgenWASHC2A
Genetic Testing Registry WASHC2A
NextProtQ641Q2 [Medical]
TSGene387680
GENETestsWASHC2A
Target ValidationWASHC2A
Huge Navigator WASHC2A [HugePedia]
snp3D : Map Gene to Disease387680
BioCentury BCIQWASHC2A
ClinGenWASHC2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387680
Chemical/Pharm GKB GenePA134902481
Clinical trialWASHC2A
Miscellaneous
canSAR (ICR)WASHC2A (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWASHC2A
EVEXWASHC2A
GoPubMedWASHC2A
iHOPWASHC2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:38:16 CEST 2018
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