Atlas of Genetics and Cytogenetics in Oncology and Haematology

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WASHC2A (WASH complex subunit 2A)

Identity

Alias (NCBI)FAM21A
FAM21B
bA56A21.1
bA98I6.1
HGNC (Hugo) WASHC2A
HGNC Alias symbbA56A21.1
bA98I6.1
FLJ10824
HGNC Previous nameFAM21B
 FAM21A
HGNC Previous namefamily with sequence similarity 21, member B
 family with sequence similarity 21, member A
 family with sequence similarity 21 member A
LocusID (NCBI) 387680
Atlas_Id 58098
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50067954 and ends at 50133509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)WASHC2A   23416
Cards
Entrez_Gene (NCBI)WASHC2A    WASH complex subunit 2A
AliasesFAM21A; FAM21B; bA56A21.1; bA98I6.1
GeneCards (Weizmann)WASHC2A
Ensembl hg19 (Hinxton)ENSG00000099290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099290 [Gene_View]  ENSG00000099290 [Sequence]  chr10:50067954-50133509 [Contig_View]  WASHC2A [Vega]
ICGC DataPortalENSG00000099290
TCGA cBioPortalWASHC2A
AceView (NCBI)WASHC2A
Genatlas (Paris)WASHC2A
SOURCE (Princeton)WASHC2A
Genetics Home Reference (NIH)WASHC2A
Genomic and cartography
GoldenPath hg38 (UCSC)WASHC2A  -     chr10:50067954-50133509 +  10q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WASHC2A  -     10q11.23   [Description]    (hg19-Feb_2009)
GoldenPathWASHC2A - 10q11.23 [CytoView hg19]  WASHC2A - 10q11.23 [CytoView hg38]
ImmunoBaseENSG00000099290
Genome Data Viewer NCBIWASHC2A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA147749 AK001686 AK055424 AK125147 AK295129
RefSeq transcript (Entrez)NM_001005751 NM_001291398 NM_001330102 NM_018232
Consensus coding sequences : CCDS (NCBI)WASHC2A
Gene ExpressionWASHC2A [ NCBI-GEO ]   WASHC2A [ EBI - ARRAY_EXPRESS ]   WASHC2A [ SEEK ]   WASHC2A [ MEM ]
Gene Expression Viewer (FireBrowse)WASHC2A [ Firebrowse - Broad ]
GenevisibleExpression of WASHC2A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387680
GTEX Portal (Tissue expression)WASHC2A
Human Protein AtlasENSG00000099290-WASHC2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ641Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ641Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ641Q2
PhosPhoSitePlusQ641Q2
Domains : Interpro (EBI)FAM21/CAPZIP   
Domain families : Pfam (Sanger)CAP-ZIP_m (PF15255)   
Domain families : Pfam (NCBI)pfam15255   
Conserved Domain (NCBI)WASHC2A
SuperfamilyQ641Q2
AlphaFold pdb e-kbQ641Q2   
Human Protein Atlas [tissue]ENSG00000099290-WASHC2A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q641Q2
IntAct (EBI)Q641Q2
BioGRIDWASHC2A
STRING (EMBL)WASHC2A
ZODIACWASHC2A
Ontologies - Pathways
QuickGOQ641Q2
Ontology : AmiGOprotein binding  nucleolus  early endosome  cytosol  plasma membrane  lipid binding  protein transport  early endosome membrane  protein localization to endosome  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  WASH complex  
Ontology : EGO-EBIprotein binding  nucleolus  early endosome  cytosol  plasma membrane  lipid binding  protein transport  early endosome membrane  protein localization to endosome  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  WASH complex  
NDEx NetworkWASHC2A
Atlas of Cancer Signalling NetworkWASHC2A
Wikipedia pathwaysWASHC2A
Orthology - Evolution
OrthoDB387680
GeneTree (enSembl)ENSG00000099290
Phylogenetic Trees/Animal Genes : TreeFamWASHC2A
Homologs : HomoloGeneWASHC2A
Homology/Alignments : Family Browser (UCSC)WASHC2A
Gene fusions - Rearrangements
Fusion : QuiverWASHC2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWASHC2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WASHC2A
dbVarWASHC2A
ClinVarWASHC2A
MonarchWASHC2A
1000_GenomesWASHC2A 
Exome Variant ServerWASHC2A
GNOMAD BrowserENSG00000099290
Varsome BrowserWASHC2A
ACMGWASHC2A variants
VarityQ641Q2
Genomic Variants (DGV)WASHC2A [DGVbeta]
DECIPHERWASHC2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWASHC2A 
Mutations
ICGC Data PortalWASHC2A 
TCGA Data PortalWASHC2A 
Broad Tumor PortalWASHC2A
OASIS PortalWASHC2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWASHC2A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWASHC2A
Mutations and Diseases : HGMDWASHC2A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaWASHC2A
DgiDB (Drug Gene Interaction Database)WASHC2A
DoCM (Curated mutations)WASHC2A
CIViC (Clinical Interpretations of Variants in Cancer)WASHC2A
Cancer3DWASHC2A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWASHC2A
MedgenWASHC2A
Genetic Testing Registry WASHC2A
NextProtQ641Q2 [Medical]
GENETestsWASHC2A
Target ValidationWASHC2A
Huge Navigator WASHC2A [HugePedia]
ClinGenWASHC2A
Clinical trials, drugs, therapy
MyCancerGenomeWASHC2A
Protein Interactions : CTDWASHC2A
Pharm GKB GenePA134902481
PharosQ641Q2
Clinical trialWASHC2A
Miscellaneous
canSAR (ICR)WASHC2A
HarmonizomeWASHC2A
DataMed IndexWASHC2A
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWASHC2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:13 CEST 2021
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